Wall clock time and date at job start Mon Mar 30 2020 02:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47356 * 301.41343 * 3 2 1 5 5 C 1.53006 * 109.47408 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47151 * 179.97438 * 5 4 3 7 7 C 1.36417 * 126.55507 * 265.02685 * 6 5 4 8 8 C 1.36219 * 107.19395 * 179.97438 * 7 6 5 9 9 N 1.32760 * 108.61786 * 0.26155 * 8 7 6 10 10 C 1.32988 * 109.22557 * 359.56535 * 9 8 7 11 11 C 1.39992 * 125.96482 * 180.17310 * 10 9 8 12 12 H 1.08003 * 119.99981 * 174.56154 * 11 10 9 13 13 C 1.40240 * 120.00195 * 354.56343 * 11 10 9 14 14 N 1.30691 * 119.99838 * 6.06697 * 13 11 10 15 15 Si 1.86797 * 120.00064 * 186.06552 * 13 11 10 16 16 H 1.48502 * 109.47038 * 94.98512 * 15 13 11 17 17 H 1.48503 * 109.47156 * 214.97914 * 15 13 11 18 18 H 1.48494 * 109.47439 * 334.98029 * 15 13 11 19 19 H 1.09007 * 109.47210 * 181.41178 * 3 2 1 20 20 H 1.08999 * 109.47368 * 61.40909 * 3 2 1 21 21 H 1.08992 * 109.47525 * 59.99917 * 4 3 2 22 22 H 1.09007 * 109.46856 * 299.99909 * 4 3 2 23 23 H 1.09002 * 109.46932 * 59.99877 * 5 4 3 24 24 H 1.08997 * 109.46423 * 300.00028 * 5 4 3 25 25 H 1.07996 * 126.40373 * 359.93529 * 7 6 5 26 26 H 1.07995 * 125.69533 * 179.97438 * 8 7 6 27 27 H 0.97001 * 119.99979 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7509 1.2310 5 6 4.6484 -0.7497 1.2314 6 7 5.1370 -1.4689 2.4105 7 6 5.4967 -0.9193 3.6061 8 6 5.8883 -1.9411 4.4174 9 7 5.7802 -3.0810 3.7455 10 6 5.3203 -2.8273 2.5238 11 6 5.0717 -3.7766 1.5253 12 1 4.6147 -3.4743 0.5946 13 6 5.4159 -5.1200 1.7337 14 7 5.8582 -5.5078 2.9007 15 14 5.2420 -6.3552 0.3432 16 1 6.5437 -6.4986 -0.3571 17 1 4.8308 -7.6700 0.8976 18 1 4.2135 -5.8790 -0.6162 19 1 2.9709 1.0282 0.0253 20 1 2.9715 -0.4910 -0.9023 21 1 2.7555 -1.7784 1.2058 22 1 2.7548 -0.2593 2.1335 23 1 5.0109 0.2780 1.2569 24 1 5.0122 -1.2410 0.3290 25 1 5.4756 0.1298 3.8615 26 1 6.2339 -1.8402 5.4356 27 1 6.0967 -6.4369 3.0447 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379359478.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:42 Heat of formation + Delta-G solvation = 73.060581 kcal Electronic energy + Delta-G solvation = -12514.561889 eV Core-core repulsion = 10273.237111 eV Total energy + Delta-G solvation = -2241.324778 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.87224 -36.95195 -34.61652 -33.30344 -31.15049 -28.60908 -26.49127 -24.79277 -22.02565 -19.87799 -19.25961 -17.64921 -16.47208 -15.52609 -15.37753 -14.57855 -14.27650 -13.51234 -13.13025 -12.85880 -12.66301 -12.43973 -11.99067 -11.59039 -11.44541 -11.27900 -11.14096 -11.10173 -10.55103 -10.41337 -10.10730 -9.19148 -7.96201 -7.74514 -7.03406 -6.38947 -4.26403 2.76866 2.81536 3.05125 3.16511 3.18707 3.65355 3.97315 4.05556 4.38344 4.74874 5.02785 5.22560 5.35239 5.49105 5.56786 5.75962 5.87761 6.19949 6.32365 6.47234 6.59507 7.16308 7.30775 7.58676 7.63683 8.09459 8.24145 8.60348 8.98525 9.34665 10.27611 10.54909 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.010790 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.688975 B = 2594.408280 C = 3509.793397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.213 3.787 3 C -0.024 4.024 4 C -0.134 4.134 5 C 0.132 3.868 6 N -0.508 5.508 7 C -0.179 4.179 8 C -0.016 4.016 9 N -0.521 5.521 10 C 0.376 3.624 11 C -0.463 4.463 12 H 0.078 0.922 13 C 0.083 3.917 14 N -0.742 5.742 15 Si 0.907 3.093 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.264 1.264 19 H 0.107 0.893 20 H 0.111 0.889 21 H 0.083 0.917 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.113 7.171 -6.071 9.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.104 4.104 3 C -0.065 4.065 4 C -0.174 4.174 5 C 0.007 3.993 6 N -0.199 5.199 7 C -0.309 4.309 8 C -0.168 4.168 9 N -0.242 5.242 10 C 0.133 3.867 11 C -0.503 4.503 12 H 0.096 0.904 13 C -0.141 4.141 14 N -0.367 5.367 15 Si 0.732 3.268 16 H -0.197 1.197 17 H -0.203 1.203 18 H -0.189 1.189 19 H 0.125 0.875 20 H 0.129 0.871 21 H 0.102 0.898 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.152 0.848 26 H 0.149 0.851 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.568 6.334 -5.671 8.881 hybrid contribution 0.165 0.375 -0.801 0.900 sum -2.403 6.709 -6.472 9.627 Atomic orbital electron populations 1.81196 1.13238 1.09165 1.08976 1.29285 0.95411 0.92845 0.92894 1.19288 0.81397 1.03898 1.01869 1.21993 0.97116 1.02091 0.96183 1.21177 0.92094 0.96658 0.89399 1.45383 1.56035 1.07807 1.10634 1.21813 1.21849 0.97727 0.89473 1.22139 1.05366 0.90541 0.98788 1.71291 1.25899 1.23617 1.03348 1.20293 0.94433 0.78991 0.92981 1.18090 1.40962 0.91024 1.00197 0.90391 1.25690 0.93795 0.98704 0.95908 1.70023 1.28610 1.16819 1.21229 0.86344 0.79170 0.79896 0.81437 1.19721 1.20345 1.18855 0.87461 0.87065 0.89823 0.91104 0.91102 0.89985 0.84834 0.85052 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.07 18.54 42.15 0.78 -6.29 15 2 C 0.21 2.71 15.43 -20.76 -0.32 2.39 15 3 C -0.02 -0.22 5.70 -29.52 -0.17 -0.39 15 4 C -0.13 -1.82 5.49 -26.73 -0.15 -1.96 15 5 C 0.13 2.05 5.83 -4.04 -0.02 2.03 15 6 N -0.51 -11.26 2.81 -115.97 -0.33 -11.58 15 7 C -0.18 -3.96 11.60 -16.24 -0.19 -4.15 15 8 C -0.02 -0.39 11.85 -17.88 -0.21 -0.60 15 9 N -0.52 -15.00 9.43 -12.72 -0.12 -15.12 15 10 C 0.38 10.09 7.43 -155.60 -1.16 8.94 15 11 C -0.46 -12.08 8.99 -38.17 -0.34 -12.42 15 12 H 0.08 1.83 7.38 -52.48 -0.39 1.44 15 13 C 0.08 2.14 5.49 -17.29 -0.09 2.04 15 14 N -0.74 -20.61 11.92 55.56 0.66 -19.95 15 15 Si 0.91 18.78 29.57 -169.99 -5.03 13.75 15 16 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 17 H -0.28 -5.73 7.11 56.52 0.40 -5.32 15 18 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 19 H 0.11 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.11 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.08 1.22 7.68 -51.93 -0.40 0.82 15 25 H 0.13 2.47 8.06 -52.49 -0.42 2.05 15 26 H 0.13 2.91 8.06 -52.49 -0.42 2.48 15 27 H 0.27 6.87 8.29 -40.82 -0.34 6.53 15 LS Contribution 251.57 15.07 3.79 3.79 Total: -1.00 -33.16 251.57 -5.77 -38.92 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -2.88 Total: 0.62 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -2.65 Total: -4.14 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 1.00 Total: -52.94 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.16 -5.77 -38.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379359478.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.985 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds