Wall clock time and date at job start Mon Mar 30 2020 02:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47336 * 49.46155 * 3 2 1 5 5 C 1.36930 * 119.99691 * 268.56513 * 4 3 2 6 6 H 1.08001 * 120.00096 * 322.05394 * 5 4 3 7 7 C 1.38814 * 119.99950 * 142.06384 * 5 4 3 8 8 N 1.31619 * 120.00026 * 157.00145 * 7 5 4 9 9 Si 1.86798 * 119.99927 * 336.99590 * 7 5 4 10 10 H 1.48500 * 109.46881 * 95.69933 * 9 7 5 11 11 H 1.48500 * 109.47255 * 215.69871 * 9 7 5 12 12 H 1.48498 * 109.47288 * 335.70420 * 9 7 5 13 13 C 1.46504 * 120.00088 * 88.56039 * 4 3 2 14 14 C 1.50704 * 109.47116 * 90.00197 * 13 4 3 15 15 C 1.34842 * 125.88951 * 94.99613 * 14 13 4 16 16 C 1.40891 * 107.41616 * 180.02562 * 15 14 13 17 17 C 1.34849 * 107.41737 * 0.02562 * 16 15 14 18 18 N 1.36339 * 125.88921 * 275.33667 * 14 13 4 19 19 H 0.97001 * 125.64321 * 359.97438 * 18 14 13 20 20 H 1.08995 * 109.47523 * 289.45822 * 3 2 1 21 21 H 1.09010 * 109.46937 * 169.45744 * 3 2 1 22 22 H 0.96999 * 119.99668 * 179.97438 * 8 7 5 23 23 H 1.09001 * 109.46864 * 330.00695 * 13 4 3 24 24 H 1.08997 * 109.47097 * 209.99964 * 13 4 3 25 25 H 1.08002 * 126.29373 * 0.04924 * 15 14 13 26 26 H 1.08007 * 126.28769 * 179.97438 * 16 15 14 27 27 H 1.08002 * 125.88623 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0967 -0.8969 -1.0497 5 6 3.3535 -2.2108 -0.7621 6 1 3.7925 -2.4800 0.1872 7 6 3.0498 -3.1967 -1.6909 8 7 3.6724 -4.3555 -1.6480 9 14 1.7574 -2.8789 -3.0016 10 1 2.4202 -2.4246 -4.2504 11 1 1.0043 -4.1307 -3.2680 12 1 0.8203 -1.8286 -2.5284 13 6 3.3107 -0.3887 -2.4070 14 6 4.7230 0.1210 -2.5358 15 6 5.7745 -0.5758 -3.0122 16 6 6.9001 0.2700 -2.9587 17 6 6.4935 1.4513 -2.4511 18 7 5.1592 1.3641 -2.1846 19 1 4.6106 2.0706 -1.8093 20 1 2.9715 -0.3415 0.9689 21 1 2.9708 1.0112 -0.1880 22 1 3.4599 -5.0446 -2.2967 23 1 2.6117 0.4240 -2.6050 24 1 3.1473 -1.1918 -3.1256 25 1 5.7571 -1.5949 -3.3695 26 1 7.9041 0.0181 -3.2668 27 1 7.1181 2.3158 -2.2810 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379374918.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:24 Heat of formation + Delta-G solvation = 101.676799 kcal Electronic energy + Delta-G solvation = -12927.657802 eV Core-core repulsion = 10687.573917 eV Total energy + Delta-G solvation = -2240.083886 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.44304 -36.73638 -35.04324 -31.85484 -30.32053 -29.86029 -27.23429 -25.16334 -21.98527 -20.07085 -19.57017 -17.75503 -17.03234 -16.12022 -15.23819 -14.91545 -13.71799 -13.38412 -13.12632 -13.04804 -12.72421 -12.40703 -12.18078 -11.97107 -11.69440 -11.53726 -11.04366 -10.71256 -10.55322 -10.18543 -9.78871 -8.70648 -8.23434 -7.44553 -7.25027 -6.15122 -3.62936 2.80534 3.21376 3.38667 3.39842 3.45428 3.48523 3.71642 3.87705 4.38552 4.82845 4.98043 5.24896 5.57273 5.66792 5.76486 5.86348 6.06975 6.15054 6.33243 6.41931 6.84564 7.02583 7.65121 7.74952 7.82352 8.14201 8.18810 8.30059 8.71435 9.49393 9.79778 10.98634 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.025754 B = 0.015022 C = 0.011101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.929978 B = 1863.448660 C = 2521.787736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.198 3.802 3 C 0.229 3.771 4 N -0.581 5.581 5 C -0.281 4.281 6 H 0.088 0.912 7 C 0.052 3.948 8 N -0.882 5.882 9 Si 0.862 3.138 10 H -0.279 1.279 11 H -0.295 1.295 12 H -0.267 1.267 13 C 0.195 3.805 14 C 0.024 3.976 15 C -0.181 4.181 16 C -0.202 4.202 17 C -0.035 4.035 18 N -0.559 5.559 19 H 0.405 0.595 20 H 0.102 0.898 21 H 0.079 0.921 22 H 0.267 0.733 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.131 0.869 26 H 0.126 0.874 27 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 10.984 -1.346 11.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.122 4.122 3 C 0.099 3.901 4 N -0.301 5.301 5 C -0.409 4.409 6 H 0.105 0.895 7 C -0.152 4.152 8 N -0.521 5.521 9 Si 0.691 3.309 10 H -0.206 1.206 11 H -0.223 1.223 12 H -0.192 1.192 13 C 0.069 3.931 14 C -0.090 4.090 15 C -0.205 4.205 16 C -0.228 4.228 17 C -0.166 4.166 18 N -0.155 5.155 19 H 0.240 0.760 20 H 0.120 0.880 21 H 0.097 0.903 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.149 0.851 26 H 0.144 0.856 27 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.530 10.865 -1.345 11.237 hybrid contribution -0.452 0.215 -0.631 0.805 sum 2.078 11.080 -1.976 11.445 Atomic orbital electron populations 1.80988 1.14378 1.10307 1.09920 1.31633 0.97164 0.91515 0.91930 1.18859 0.79077 0.95814 0.96364 1.44223 1.72239 1.08149 1.05477 1.18752 1.37183 0.79516 1.05464 0.89483 1.25420 0.96789 0.94976 0.97980 1.69853 1.39375 1.06191 1.36632 0.87176 0.83938 0.77679 0.82105 1.20621 1.22291 1.19182 1.19874 0.87964 0.97137 0.88135 1.21411 0.98604 0.84901 1.04110 1.20705 0.91950 0.99785 1.08105 1.20838 0.98830 0.94352 1.08770 1.21583 0.84675 1.00551 1.09742 1.41949 1.08842 1.13007 1.51718 0.76033 0.87989 0.90289 0.92300 0.93358 0.90189 0.85063 0.85643 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.27 18.54 42.15 0.78 -9.49 15 2 C 0.20 3.81 15.77 -20.76 -0.33 3.48 15 3 C 0.23 3.84 6.14 -6.83 -0.04 3.80 15 4 N -0.58 -12.27 2.01 -177.94 -0.36 -12.63 15 5 C -0.28 -7.20 9.90 -15.06 -0.15 -7.35 15 6 H 0.09 2.39 8.06 -52.49 -0.42 1.97 15 7 C 0.05 1.40 5.29 -17.43 -0.09 1.31 15 8 N -0.88 -25.52 13.97 55.49 0.78 -24.75 15 9 Si 0.86 21.35 25.10 -169.99 -4.27 17.08 15 10 H -0.28 -6.60 6.68 56.52 0.38 -6.23 15 11 H -0.30 -7.53 7.11 56.52 0.40 -7.13 15 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 15 13 C 0.19 3.87 5.05 -5.19 -0.03 3.85 15 14 C 0.02 0.45 6.75 -81.79 -0.55 -0.11 15 15 C -0.18 -3.55 10.76 -39.78 -0.43 -3.98 15 16 C -0.20 -3.37 10.86 -39.78 -0.43 -3.80 15 17 C -0.04 -0.50 11.94 -16.75 -0.20 -0.70 15 18 N -0.56 -8.16 6.07 -9.12 -0.06 -8.22 15 19 H 0.40 4.52 8.96 -40.82 -0.37 4.16 15 20 H 0.10 1.58 8.03 -51.93 -0.42 1.16 15 21 H 0.08 1.01 8.08 -51.92 -0.42 0.59 15 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 23 H 0.05 0.84 8.07 -51.93 -0.42 0.42 15 24 H 0.08 1.79 3.38 -51.93 -0.18 1.62 15 25 H 0.13 2.78 8.06 -52.49 -0.42 2.36 15 26 H 0.13 1.84 8.06 -52.48 -0.42 1.42 15 27 H 0.15 1.61 8.06 -52.49 -0.42 1.19 15 LS Contribution 246.11 15.07 3.71 3.71 Total: -1.00 -31.29 246.11 -4.31 -35.61 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -2.65 Total: 2.20 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -2.25 Total: -3.51 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 1.14 Total: -55.09 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.27 Total: 17.08 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.29 -4.31 -35.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379374918.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.282 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds