Wall clock time and date at job start Mon Mar 30 2020 02:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47336 * 49.46155 * 3 2 1 5 5 C 1.36930 * 119.99691 * 268.56513 * 4 3 2 6 6 H 1.08001 * 120.00096 * 322.05394 * 5 4 3 7 7 C 1.38814 * 119.99950 * 142.06384 * 5 4 3 8 8 N 1.31619 * 120.00026 * 157.00145 * 7 5 4 9 9 Si 1.86798 * 119.99927 * 336.99590 * 7 5 4 10 10 H 1.48500 * 109.46881 * 95.69933 * 9 7 5 11 11 H 1.48500 * 109.47255 * 215.69871 * 9 7 5 12 12 H 1.48498 * 109.47288 * 335.70420 * 9 7 5 13 13 C 1.46504 * 120.00088 * 88.56039 * 4 3 2 14 14 C 1.50704 * 109.47116 * 90.00197 * 13 4 3 15 15 C 1.34842 * 125.88951 * 94.99613 * 14 13 4 16 16 C 1.40891 * 107.41616 * 180.02562 * 15 14 13 17 17 C 1.34849 * 107.41737 * 0.02562 * 16 15 14 18 18 N 1.36339 * 125.88921 * 275.33667 * 14 13 4 19 19 H 0.97001 * 125.64321 * 359.97438 * 18 14 13 20 20 H 1.08995 * 109.47523 * 289.45822 * 3 2 1 21 21 H 1.09010 * 109.46937 * 169.45744 * 3 2 1 22 22 H 0.96999 * 119.99668 * 179.97438 * 8 7 5 23 23 H 1.09001 * 109.46864 * 330.00695 * 13 4 3 24 24 H 1.08997 * 109.47097 * 209.99964 * 13 4 3 25 25 H 1.08002 * 126.29373 * 0.04924 * 15 14 13 26 26 H 1.08007 * 126.28769 * 179.97438 * 16 15 14 27 27 H 1.08002 * 125.88623 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0967 -0.8969 -1.0497 5 6 3.3535 -2.2108 -0.7621 6 1 3.7925 -2.4800 0.1872 7 6 3.0498 -3.1967 -1.6909 8 7 3.6724 -4.3555 -1.6480 9 14 1.7574 -2.8789 -3.0016 10 1 2.4202 -2.4246 -4.2504 11 1 1.0043 -4.1307 -3.2680 12 1 0.8203 -1.8286 -2.5284 13 6 3.3107 -0.3887 -2.4070 14 6 4.7230 0.1210 -2.5358 15 6 5.7745 -0.5758 -3.0122 16 6 6.9001 0.2700 -2.9587 17 6 6.4935 1.4513 -2.4511 18 7 5.1592 1.3641 -2.1846 19 1 4.6106 2.0706 -1.8093 20 1 2.9715 -0.3415 0.9689 21 1 2.9708 1.0112 -0.1880 22 1 3.4599 -5.0446 -2.2967 23 1 2.6117 0.4240 -2.6050 24 1 3.1473 -1.1918 -3.1256 25 1 5.7571 -1.5949 -3.3695 26 1 7.9041 0.0181 -3.2668 27 1 7.1181 2.3158 -2.2810 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379374918.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:23 Heat of formation + Delta-G solvation = 80.665032 kcal Electronic energy + Delta-G solvation = -12928.568941 eV Core-core repulsion = 10687.573917 eV Total energy + Delta-G solvation = -2240.995024 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.73059 -38.35097 -36.70101 -33.83993 -31.61132 -31.27554 -28.86915 -26.74289 -23.75963 -21.32560 -20.94172 -19.37333 -18.66605 -17.55681 -17.11330 -16.44838 -15.34788 -14.96217 -14.58423 -14.47818 -14.23752 -14.12793 -13.82569 -13.58269 -13.20944 -12.96177 -12.77662 -12.40723 -12.13850 -12.00130 -11.73780 -10.71452 -9.52014 -9.10120 -8.72539 -8.24068 -5.66543 1.23693 1.37257 1.43292 1.48979 1.91093 1.98100 2.31682 2.35284 2.69971 3.03958 3.43110 3.53921 4.18330 4.39601 4.57228 4.62775 4.68711 4.81640 4.89558 5.05393 5.55260 5.65049 5.87262 6.15671 6.29944 6.44767 6.74964 6.86350 7.07746 7.50380 7.87260 8.94073 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.025754 B = 0.015022 C = 0.011101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.929978 B = 1863.448660 C = 2521.787736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C 0.216 3.784 3 C 0.229 3.771 4 N -0.591 5.591 5 C -0.257 4.257 6 H 0.063 0.937 7 C 0.001 3.999 8 N -0.931 5.931 9 Si 0.916 3.084 10 H -0.269 1.269 11 H -0.311 1.311 12 H -0.270 1.270 13 C 0.193 3.807 14 C 0.012 3.988 15 C -0.217 4.217 16 C -0.231 4.231 17 C -0.001 4.001 18 N -0.542 5.542 19 H 0.426 0.574 20 H 0.119 0.881 21 H 0.134 0.866 22 H 0.263 0.737 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.096 0.904 26 H 0.138 0.862 27 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.780 14.345 -0.987 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C -0.103 4.103 3 C 0.100 3.900 4 N -0.312 5.312 5 C -0.387 4.387 6 H 0.081 0.919 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.746 3.254 10 H -0.196 1.196 11 H -0.240 1.240 12 H -0.194 1.194 13 C 0.068 3.932 14 C -0.103 4.103 15 C -0.242 4.242 16 C -0.256 4.256 17 C -0.133 4.133 18 N -0.139 5.139 19 H 0.265 0.735 20 H 0.137 0.863 21 H 0.151 0.849 22 H 0.073 0.927 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.114 0.886 26 H 0.156 0.844 27 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.027 14.291 -0.983 14.641 hybrid contribution -0.517 -0.717 -0.677 1.114 sum 2.510 13.574 -1.660 13.903 Atomic orbital electron populations 1.81019 1.15783 1.11782 1.11217 1.31979 0.97434 0.90202 0.90657 1.19269 0.77396 0.97644 0.95724 1.44268 1.72857 1.07138 1.06905 1.18688 1.34621 0.81596 1.03758 0.91939 1.25886 0.98590 0.95119 1.00152 1.69956 1.41597 1.07457 1.38334 0.86305 0.81733 0.76375 0.81031 1.19570 1.24005 1.19450 1.19792 0.89731 0.97081 0.86604 1.20934 0.97391 0.86575 1.05423 1.20726 0.94408 0.99196 1.09919 1.21067 0.98798 0.95113 1.10594 1.22238 0.84384 1.00697 1.05935 1.41847 1.09311 1.12046 1.50681 0.73534 0.86290 0.84887 0.92732 0.90298 0.93224 0.88551 0.84445 0.78112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -21.31 18.54 20.00 0.37 -20.93 15 2 C 0.22 7.72 15.77 89.44 1.41 9.13 15 3 C 0.23 6.77 6.14 84.57 0.52 7.29 15 4 N -0.59 -23.76 2.01 -716.88 -1.44 -25.20 15 5 C -0.26 -13.17 9.90 84.03 0.83 -12.34 15 6 H 0.06 3.48 8.06 -2.91 -0.02 3.46 15 7 C 0.00 0.06 5.29 84.86 0.45 0.51 15 8 N -0.93 -55.95 13.97 21.65 0.30 -55.65 15 9 Si 0.92 45.23 25.10 68.60 1.72 46.95 15 10 H -0.27 -12.63 6.68 99.48 0.66 -11.96 15 11 H -0.31 -15.98 7.11 99.48 0.71 -15.27 15 12 H -0.27 -13.24 7.11 99.48 0.71 -12.53 15 13 C 0.19 7.28 5.05 85.63 0.43 7.71 15 14 C 0.01 0.42 6.75 41.08 0.28 0.69 15 15 C -0.22 -8.49 10.76 22.14 0.24 -8.25 15 16 C -0.23 -7.20 10.86 22.14 0.24 -6.96 15 17 C 0.00 -0.02 11.94 83.21 0.99 0.97 15 18 N -0.54 -13.26 6.07 -182.77 -1.11 -14.37 15 19 H 0.43 6.92 8.96 -92.71 -0.83 6.09 15 20 H 0.12 3.23 8.03 -2.39 -0.02 3.21 15 21 H 0.13 2.59 8.08 -2.38 -0.02 2.57 15 22 H 0.26 15.20 8.31 -92.71 -0.77 14.43 15 23 H 0.08 2.46 8.07 -2.39 -0.02 2.44 15 24 H 0.05 2.19 3.38 -2.39 -0.01 2.18 15 25 H 0.10 4.34 8.06 -2.91 -0.02 4.32 15 26 H 0.14 3.79 8.06 -2.91 -0.02 3.77 15 27 H 0.20 2.82 8.06 -2.91 -0.02 2.80 15 Total: -1.00 -70.49 246.11 5.55 -64.94 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 0.32 Total: 5.51 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 5.39 Total: -1.24 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -1.88 Total: -116.15 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.72 Total: 46.95 kcal Total: -70.49 5.55 -64.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379374918.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.601 kcal (2) G-P(sol) polarization free energy of solvation -70.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds