Wall clock time and date at job start Mon Mar 30 2020 02:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47388 * 184.70337 * 3 2 1 5 5 C 1.36940 * 120.00329 * 263.94157 * 4 3 2 6 6 H 1.07996 * 120.00472 * 199.81509 * 5 4 3 7 7 C 1.38814 * 119.99718 * 19.81040 * 5 4 3 8 8 N 1.31623 * 119.99978 * 21.97175 * 7 5 4 9 9 Si 1.86798 * 119.99887 * 201.96804 * 7 5 4 10 10 H 1.48497 * 109.47449 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47023 * 120.00367 * 9 7 5 12 12 H 1.48504 * 109.47224 * 239.99861 * 9 7 5 13 13 C 1.46501 * 120.00093 * 83.93709 * 4 3 2 14 14 C 1.50692 * 109.47495 * 90.00409 * 13 4 3 15 15 C 1.40894 * 126.28897 * 270.30003 * 14 13 4 16 16 C 1.34851 * 107.41700 * 180.12276 * 15 14 13 17 17 N 1.36348 * 108.21688 * 359.62276 * 16 15 14 18 18 H 0.96996 * 125.63601 * 180.25778 * 17 16 15 19 19 C 1.34845 * 126.29256 * 89.99480 * 14 13 4 20 20 H 1.09003 * 109.47254 * 64.70427 * 3 2 1 21 21 H 1.08999 * 109.47564 * 304.70442 * 3 2 1 22 22 H 0.97003 * 120.00091 * 179.97438 * 8 7 5 23 23 H 1.08999 * 109.47081 * 329.99686 * 13 4 3 24 24 H 1.09007 * 109.47218 * 210.00586 * 13 4 3 25 25 H 1.07993 * 126.29455 * 359.97438 * 15 14 13 26 26 H 1.07993 * 125.89642 * 179.88354 * 16 15 14 27 27 H 1.08003 * 125.89236 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.3774 0.1133 5 6 3.4417 2.0761 -1.0125 6 1 4.0853 2.9398 -0.9356 7 6 2.9651 1.6740 -2.2528 8 7 1.8795 0.9339 -2.3323 9 14 3.8644 2.1832 -3.8088 10 1 5.0472 3.0063 -3.4501 11 1 4.3094 0.9712 -4.5425 12 1 2.9518 2.9764 -4.6709 13 6 3.2133 2.0068 1.4309 14 6 4.5858 1.7416 1.9937 15 6 4.9628 0.6411 2.7886 16 6 6.2713 0.7843 3.0817 17 7 6.7179 1.9286 2.4898 18 1 7.6242 2.2714 2.5346 19 6 5.6802 2.5110 1.8243 20 1 2.9715 -0.4383 -0.9291 21 1 2.9716 -0.5843 0.8448 22 1 1.5463 0.6532 -3.1989 23 1 2.4597 1.5919 2.1003 24 1 3.0615 3.0820 1.3349 25 1 4.3213 -0.1672 3.1069 26 1 6.8643 0.1072 3.6784 27 1 5.7270 3.4296 1.2583 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388261941.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:58 Heat of formation + Delta-G solvation = 80.613008 kcal Electronic energy + Delta-G solvation = -12801.828118 eV Core-core repulsion = 10560.830838 eV Total energy + Delta-G solvation = -2240.997280 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.59670 -38.07434 -36.13394 -33.67880 -31.68457 -29.96675 -28.57764 -27.02287 -23.58160 -21.38627 -20.01070 -19.24046 -18.73057 -17.40156 -16.91698 -15.58236 -15.52249 -14.62440 -14.31987 -14.24569 -13.97458 -13.60314 -13.38726 -13.21476 -12.92238 -12.75636 -12.71202 -12.13442 -11.88406 -11.78312 -11.59797 -10.59654 -9.35145 -8.94476 -8.70228 -7.86380 -5.24369 1.51478 1.55427 1.63916 1.67380 2.17550 2.50210 2.54231 2.65930 2.81949 3.32794 3.97075 3.99521 4.47238 4.61227 4.71601 4.86221 4.98095 5.14731 5.16871 5.27447 5.58978 5.72823 5.77185 6.32157 6.34787 6.51297 7.09551 7.12305 7.35615 7.84888 8.28554 9.20083 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.028256 B = 0.012301 C = 0.009196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.705406 B = 2275.607964 C = 3043.938257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C 0.262 3.738 3 C 0.264 3.736 4 N -0.587 5.587 5 C -0.247 4.247 6 H 0.081 0.919 7 C -0.049 4.049 8 N -0.933 5.933 9 Si 0.963 3.037 10 H -0.265 1.265 11 H -0.292 1.292 12 H -0.305 1.305 13 C 0.211 3.789 14 C -0.186 4.186 15 C -0.219 4.219 16 C -0.015 4.015 17 N -0.554 5.554 18 H 0.426 0.574 19 C -0.017 4.017 20 H 0.089 0.911 21 H 0.098 0.902 22 H 0.247 0.753 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.133 0.867 26 H 0.192 0.808 27 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.888 0.328 9.454 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.231 5.231 2 C -0.056 4.056 3 C 0.134 3.866 4 N -0.307 5.307 5 C -0.377 4.377 6 H 0.098 0.902 7 C -0.244 4.244 8 N -0.580 5.580 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.219 1.219 12 H -0.234 1.234 13 C 0.085 3.915 14 C -0.195 4.195 15 C -0.244 4.244 16 C -0.146 4.146 17 N -0.151 5.151 18 H 0.264 0.736 19 C -0.149 4.149 20 H 0.107 0.893 21 H 0.115 0.885 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.150 0.850 26 H 0.209 0.791 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 11.325 0.372 9.335 14.681 hybrid contribution 0.628 0.419 -1.329 1.528 sum 11.953 0.790 8.005 14.408 Atomic orbital electron populations 1.80771 1.15729 1.11735 1.14894 1.31183 0.96901 0.89704 0.87776 1.18301 0.78759 0.87508 1.02073 1.44202 1.73848 1.10220 1.02430 1.19516 1.22320 1.10889 0.84959 0.90173 1.25514 0.96823 1.01480 1.00584 1.70061 1.21267 1.42996 1.23661 0.85275 0.78316 0.77041 0.80126 1.18883 1.21909 1.23350 1.19216 0.91577 0.96103 0.84559 1.20300 0.96996 0.98242 1.03932 1.20995 0.96300 1.00948 1.06160 1.22182 0.95795 0.92048 1.04571 1.41929 1.11453 1.20444 1.41245 0.73602 1.21731 0.87709 1.01770 1.03650 0.89294 0.88475 0.94309 0.93648 0.93508 0.84955 0.79149 0.82021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -29.40 18.54 20.00 0.37 -29.03 15 2 C 0.26 13.04 13.56 89.44 1.21 14.26 15 3 C 0.26 11.65 5.41 84.57 0.46 12.11 15 4 N -0.59 -26.87 2.47 -716.93 -1.77 -28.64 15 5 C -0.25 -12.44 9.63 84.03 0.81 -11.63 15 6 H 0.08 3.91 7.92 -2.91 -0.02 3.88 15 7 C -0.05 -2.59 4.83 84.86 0.41 -2.18 15 8 N -0.93 -53.06 9.60 21.65 0.21 -52.85 15 9 Si 0.96 43.34 29.61 68.60 2.03 45.37 15 10 H -0.26 -11.16 7.11 99.48 0.71 -10.45 15 11 H -0.29 -13.20 7.11 99.48 0.71 -12.50 15 12 H -0.31 -14.30 7.11 99.48 0.71 -13.59 15 13 C 0.21 8.24 6.17 85.63 0.53 8.77 15 14 C -0.19 -6.24 5.72 -20.00 -0.11 -6.35 15 15 C -0.22 -6.36 10.81 22.14 0.24 -6.12 15 16 C -0.01 -0.34 11.94 83.21 0.99 0.66 15 17 N -0.55 -12.24 6.08 -194.56 -1.18 -13.42 15 18 H 0.43 6.12 8.96 -92.71 -0.83 5.29 15 19 C -0.02 -0.48 11.85 83.21 0.99 0.50 15 20 H 0.09 4.26 6.61 -2.39 -0.02 4.24 15 21 H 0.10 3.52 8.12 -2.39 -0.02 3.50 15 22 H 0.25 14.10 8.31 -92.71 -0.77 13.33 15 23 H 0.05 1.73 8.07 -2.39 -0.02 1.71 15 24 H 0.05 1.86 8.04 -2.38 -0.02 1.84 15 25 H 0.13 3.59 8.06 -2.91 -0.02 3.57 15 26 H 0.19 2.80 8.06 -2.91 -0.02 2.78 15 27 H 0.16 4.41 8.06 -2.91 -0.02 4.39 15 Total: -1.00 -66.10 247.73 5.53 -60.57 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.35 Total: 7.98 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 5.52 Total: 10.02 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -2.37 Total: -123.94 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -66.10 5.53 -60.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388261941.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.183 kcal (2) G-P(sol) polarization free energy of solvation -66.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds