Wall clock time and date at job start Mon Mar 30 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.39438 * 125.69481 * 124.71867 * 3 2 1 5 5 C 1.37612 * 107.62171 * 179.82860 * 4 3 2 6 6 N 1.38021 * 145.18022 * 179.97438 * 5 4 3 7 7 C 1.37010 * 126.18407 * 0.46361 * 6 5 4 8 8 H 1.07998 * 120.00504 * 0.02562 * 7 6 5 9 9 C 1.38732 * 119.99578 * 179.97438 * 7 6 5 10 10 N 1.31536 * 120.00236 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99799 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46820 * 90.00232 * 11 9 7 13 13 H 1.48496 * 109.47230 * 210.00394 * 11 9 7 14 14 H 1.48502 * 109.47010 * 330.00191 * 11 9 7 15 15 C 1.38052 * 107.62696 * 180.45159 * 6 5 4 16 16 C 1.33162 * 108.43648 * 359.97438 * 15 6 5 17 17 N 1.36168 * 107.32970 * 0.42782 * 5 4 3 18 18 N 1.31111 * 125.70136 * 305.02179 * 3 2 1 19 19 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 20 20 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 22 22 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 23 23 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 24 24 H 1.07995 * 126.18615 * 0.02562 * 4 3 2 25 25 H 0.96995 * 120.00137 * 179.97438 * 10 9 7 26 26 H 1.08007 * 125.78533 * 179.97438 * 15 6 5 27 27 H 1.08003 * 125.68305 * 180.02562 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9116 1.9730 0.9308 5 6 3.1214 3.2864 0.5777 6 7 3.7772 4.4564 0.9033 7 6 4.6285 4.6390 1.9612 8 1 4.8389 3.8198 2.6328 9 6 5.2210 5.8761 2.1691 10 7 4.9652 6.8737 1.3509 11 14 6.3823 6.1249 3.6110 12 1 7.7704 5.8086 3.1888 13 1 6.3126 7.5372 4.0647 14 1 5.9870 5.2269 4.7256 15 6 3.4204 5.4092 -0.0298 16 6 2.5785 4.8531 -0.8988 17 7 2.3787 3.5302 -0.5373 18 7 1.7113 2.3459 -0.8719 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8932 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 3.3511 1.4614 1.7742 25 1 5.3792 7.7387 1.4965 26 1 3.7656 6.4324 -0.0513 27 1 2.1264 5.3503 -1.7443 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409439377.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:14 Heat of formation + Delta-G solvation = 106.903708 kcal Electronic energy + Delta-G solvation = -12819.284715 eV Core-core repulsion = 10579.427485 eV Total energy + Delta-G solvation = -2239.857230 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.30299 -39.15352 -35.80902 -33.94769 -32.84274 -29.69822 -28.97881 -26.93779 -24.66211 -22.35674 -22.01628 -20.46768 -19.23712 -17.36464 -16.70732 -16.59995 -15.94798 -15.53527 -14.88575 -14.77016 -14.21216 -13.76279 -13.65894 -13.34642 -13.10437 -12.75040 -12.58287 -12.25048 -12.13230 -12.03717 -11.27313 -11.13677 -10.79373 -9.45296 -8.66786 -8.41989 -6.29295 1.12428 1.37240 1.52257 1.54341 1.61084 1.71562 2.11978 2.16459 2.72705 2.92366 3.82559 4.12172 4.39472 4.46813 4.54208 4.83620 4.87607 5.00305 5.04343 5.11279 5.17775 5.19450 5.36751 5.43177 5.59598 5.96376 6.25204 6.57136 6.84764 7.19610 7.39930 8.33737 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.056017 B = 0.008962 C = 0.007877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.724556 B = 3123.525133 C = 3553.904384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.031 4.031 3 C 0.094 3.906 4 C -0.364 4.364 5 C 0.177 3.823 6 N -0.307 5.307 7 C -0.353 4.353 8 H 0.112 0.888 9 C 0.001 3.999 10 N -0.880 5.880 11 Si 1.027 2.973 12 H -0.264 1.264 13 H -0.265 1.265 14 H -0.260 1.260 15 C 0.029 3.971 16 C -0.106 4.106 17 N -0.311 5.311 18 N -0.375 5.375 19 H 0.043 0.957 20 H 0.089 0.911 21 H 0.043 0.957 22 H 0.088 0.912 23 H 0.098 0.902 24 H 0.140 0.860 25 H 0.291 0.709 26 H 0.225 0.775 27 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.112 -4.435 1.422 4.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.062 4.062 4 C -0.399 4.399 5 C -0.056 4.056 6 N 0.022 4.978 7 C -0.480 4.480 8 H 0.130 0.870 9 C -0.203 4.203 10 N -0.513 5.513 11 Si 0.846 3.154 12 H -0.189 1.189 13 H -0.189 1.189 14 H -0.184 1.184 15 C -0.107 4.107 16 C -0.235 4.235 17 N -0.080 5.080 18 N -0.204 5.204 19 H 0.062 0.938 20 H 0.108 0.892 21 H 0.062 0.938 22 H 0.106 0.894 23 H 0.117 0.883 24 H 0.158 0.842 25 H 0.102 0.898 26 H 0.241 0.759 27 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.668 -3.970 0.462 4.331 hybrid contribution 0.960 0.422 1.041 1.478 sum -0.708 -3.548 1.502 3.917 Atomic orbital electron populations 1.21641 0.93761 1.02795 1.01217 1.20059 0.96743 0.86105 1.04142 1.22513 0.94907 0.97108 0.91632 1.19791 1.18611 0.90874 1.10664 1.20448 0.98765 0.92338 0.94008 1.40346 1.31538 1.04883 1.21040 1.20227 1.22781 1.00205 1.04756 0.87023 1.26497 0.98767 0.93241 1.01783 1.69538 1.41417 1.03539 1.36810 0.84439 0.76773 0.78591 0.75604 1.18905 1.18930 1.18412 1.23734 0.99220 0.98621 0.89166 1.21800 1.12557 0.80525 1.08605 1.47306 1.31704 1.08853 1.20162 1.77227 1.26304 0.89078 1.27818 0.93808 0.89175 0.93815 0.89403 0.88311 0.84212 0.89779 0.75906 0.78750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.87 71.98 0.71 -2.98 15 2 C -0.03 -0.96 6.51 29.85 0.19 -0.77 15 3 C 0.09 4.12 6.47 42.96 0.28 4.40 15 4 C -0.36 -17.69 10.80 22.41 0.24 -17.45 15 5 C 0.18 9.58 8.09 131.87 1.07 10.65 15 6 N -0.31 -16.78 2.96 -348.27 -1.03 -17.81 15 7 C -0.35 -18.55 10.19 84.00 0.86 -17.69 15 8 H 0.11 5.66 7.83 -2.91 -0.02 5.64 15 9 C 0.00 0.06 5.48 84.86 0.46 0.52 15 10 N -0.88 -42.48 10.12 21.63 0.22 -42.26 15 11 Si 1.03 36.83 29.55 68.60 2.03 38.86 15 12 H -0.26 -9.20 7.11 99.48 0.71 -8.49 15 13 H -0.27 -9.01 7.11 99.48 0.71 -8.30 15 14 H -0.26 -9.11 7.11 99.48 0.71 -8.40 15 15 C 0.03 1.47 10.27 82.57 0.85 2.32 15 16 C -0.11 -5.11 11.90 82.48 0.98 -4.12 15 17 N -0.31 -16.35 4.74 -191.33 -0.91 -17.25 15 18 N -0.37 -18.54 12.64 -47.51 -0.60 -19.14 15 19 H 0.04 1.31 8.14 -2.39 -0.02 1.29 15 20 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 21 H 0.04 1.25 8.14 -2.38 -0.02 1.23 15 22 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 23 H 0.10 2.55 8.12 -2.39 -0.02 2.53 15 24 H 0.14 6.16 8.06 -2.91 -0.02 6.14 15 25 H 0.29 12.72 8.31 -92.71 -0.77 11.95 15 26 H 0.23 11.01 5.47 -2.91 -0.02 11.00 15 27 H 0.20 7.67 8.06 -2.91 -0.02 7.65 15 Total: -1.00 -62.92 239.31 6.51 -56.40 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 1.17 Total: 26.34 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 5.64 Total: -25.13 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -2.32 Total: -96.47 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Total: -62.92 6.51 -56.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409439377.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.309 kcal (2) G-P(sol) polarization free energy of solvation -62.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds