Wall clock time and date at job start Mon Mar 30 2020 02:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 109.47480 * 35.27547 * 10 9 7 12 12 C 1.52999 * 109.47493 * 155.27860 * 10 9 7 13 13 C 1.52992 * 109.47689 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46921 * 299.99639 * 13 12 10 15 15 C 1.53002 * 109.47179 * 60.00100 * 14 13 12 16 16 F 1.39898 * 109.47261 * 59.99814 * 15 14 13 17 17 F 1.39895 * 109.46958 * 180.02562 * 15 14 13 18 18 C 1.53005 * 109.46995 * 299.99723 * 15 14 13 19 19 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 20 20 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 21 21 H 1.09009 * 109.46506 * 300.00089 * 12 10 9 22 22 H 1.08999 * 109.47014 * 59.99401 * 12 10 9 23 23 H 1.08999 * 109.47499 * 59.99555 * 13 12 10 24 24 H 1.09006 * 109.47246 * 179.97438 * 13 12 10 25 25 H 1.09005 * 109.47368 * 180.02562 * 14 13 12 26 26 H 1.09000 * 109.47077 * 299.99701 * 14 13 12 27 27 H 1.09000 * 109.47108 * 300.00306 * 18 15 14 28 28 H 1.08995 * 109.46860 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 2.9685 -3.5534 0.5851 12 6 1.1806 -4.7550 0.5991 13 6 1.9457 -6.0798 0.5938 14 6 2.3105 -6.4523 -0.8446 15 6 3.1880 -5.3542 -1.4489 16 9 4.3564 -5.2210 -0.6911 17 9 3.5210 -5.6945 -2.7643 18 6 2.4228 -4.0293 -1.4436 19 1 -0.4849 0.8401 0.0004 20 1 0.3555 -2.3881 -0.0002 21 1 0.9210 -4.4898 1.6241 22 1 0.2701 -4.8584 0.0089 23 1 2.8560 -5.9761 1.1843 24 1 1.3207 -6.8621 1.0247 25 1 2.8553 -7.3965 -0.8485 26 1 1.4002 -6.5561 -1.4351 27 1 1.5124 -4.1331 -2.0341 28 1 3.0481 -3.2469 -1.8737 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575479622.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:10 Heat of formation + Delta-G solvation = -111.416977 kcal Electronic energy + Delta-G solvation = -13879.368571 eV Core-core repulsion = 11179.355059 eV Total energy + Delta-G solvation = -2700.013512 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.58752 -46.58303 -37.59767 -33.92256 -31.27499 -29.65614 -28.10063 -23.91852 -22.33140 -21.37422 -19.63943 -17.17112 -16.93418 -16.32350 -15.82198 -14.63179 -14.50590 -13.90603 -13.55940 -13.36211 -12.92555 -12.67666 -12.61484 -12.20606 -11.81616 -11.75012 -11.08290 -10.84989 -10.78295 -10.49041 -10.32083 -10.23688 -9.84576 -9.57671 -8.96939 -7.05216 -5.81246 -3.11327 3.43066 3.47475 3.48481 4.10204 4.46130 4.61456 4.68763 4.73861 5.27821 5.32976 5.48218 5.54282 5.62443 5.72827 5.83467 5.94186 6.12781 6.23456 6.34453 6.36567 6.48864 6.79499 6.93007 7.67458 8.37012 9.48627 10.03203 10.38837 11.41042 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.047676 B = 0.009173 C = 0.008417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.161084 B = 3051.599512 C = 3325.636232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.719 5.719 10 C 0.181 3.819 11 H 0.057 0.943 12 C -0.130 4.130 13 C -0.114 4.114 14 C -0.154 4.154 15 C 0.285 3.715 16 F -0.203 7.203 17 F -0.213 7.213 18 C -0.175 4.175 19 H 0.257 0.743 20 H 0.385 0.615 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 -12.117 -0.688 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.070 3.930 11 H 0.075 0.925 12 C -0.168 4.168 13 C -0.152 4.152 14 C -0.192 4.192 15 C 0.249 3.751 16 F -0.185 7.185 17 F -0.194 7.194 18 C -0.216 4.216 19 H 0.066 0.934 20 H 0.219 0.781 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.345 -11.938 -0.678 12.416 hybrid contribution 0.330 0.913 -0.274 1.009 sum 3.675 -11.025 -0.952 11.660 Atomic orbital electron populations 1.69655 1.05148 1.25930 1.57302 1.24758 0.95526 0.97780 1.02618 0.86254 0.78550 0.83351 0.77965 1.21181 1.21638 1.21131 1.19233 0.91097 0.84034 1.43268 0.91071 1.42393 1.05810 0.99560 1.88139 1.20128 0.95262 0.86671 0.90957 0.92515 1.21896 0.98887 0.93873 1.02120 1.21458 1.01202 0.98080 0.94458 1.22482 1.00480 0.97354 0.98891 1.21371 0.81878 0.98353 0.73538 1.92955 1.52258 1.97077 1.76163 1.92959 1.93730 1.93889 1.38782 1.23422 1.00731 0.93048 1.04400 0.93367 0.78069 0.90979 0.91802 0.91093 0.91018 0.90333 0.89115 0.89742 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.89 13.06 55.49 0.72 -27.17 15 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 15 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 15 4 H -0.29 -6.94 7.11 56.52 0.40 -6.53 15 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 15 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 7 C -0.25 -6.78 9.93 -15.06 -0.15 -6.93 15 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 15 9 N -0.72 -17.77 5.12 -53.42 -0.27 -18.04 15 10 C 0.18 3.55 2.65 -67.93 -0.18 3.37 15 11 H 0.06 1.18 7.74 -51.93 -0.40 0.78 15 12 C -0.13 -2.03 5.39 -26.74 -0.14 -2.18 15 13 C -0.11 -1.44 5.80 -26.74 -0.16 -1.60 15 14 C -0.15 -1.96 5.45 -26.73 -0.15 -2.11 15 15 C 0.29 4.59 2.10 -26.73 -0.06 4.54 15 16 F -0.20 -3.54 16.02 2.25 0.04 -3.50 15 17 F -0.21 -3.56 17.06 2.25 0.04 -3.52 15 18 C -0.17 -3.20 5.03 -26.72 -0.13 -3.33 15 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 20 H 0.39 10.00 7.80 -40.82 -0.32 9.68 15 21 H 0.07 1.16 8.14 -51.92 -0.42 0.73 15 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.07 0.92 7.80 -51.93 -0.41 0.52 15 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 25 H 0.08 0.88 8.14 -51.93 -0.42 0.45 15 26 H 0.09 1.05 8.14 -51.93 -0.42 0.63 15 27 H 0.08 1.50 8.14 -51.93 -0.42 1.08 15 28 H 0.08 1.70 8.14 -51.93 -0.42 1.28 15 LS Contribution 240.47 15.07 3.62 3.62 Total: -1.00 -29.53 240.47 -5.57 -35.10 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.63 Total: 4.82 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.06 Total: -8.64 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.45 Total: -45.21 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.07 Total: -7.02 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.53 -5.57 -35.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575479622.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.317 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds