Wall clock time and date at job start Mon Mar 30 2020 02:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86804 * 120.00043 * 2 1 4 4 H 1.48505 * 109.46887 * 270.00399 * 3 2 1 5 5 H 1.48497 * 109.46902 * 29.99802 * 3 2 1 6 6 H 1.48492 * 109.47371 * 149.99902 * 3 2 1 7 7 C 1.40267 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00068 * 179.97438 * 7 2 1 9 9 C 1.40367 * 120.00044 * 0.02562 * 7 2 1 10 10 N 1.33066 * 126.31598 * 179.97438 * 9 7 2 11 11 C 1.32230 * 109.79966 * 179.97438 * 10 9 7 12 12 C 1.50700 * 125.15907 * 179.97438 * 11 10 9 13 13 H 1.09002 * 115.54929 * 334.41592 * 12 11 10 14 14 C 1.53003 * 117.52101 * 188.71399 * 12 11 10 15 15 C 1.52991 * 117.50008 * 120.08473 * 12 11 10 16 16 C 1.52994 * 138.58981 * 336.62595 * 15 12 11 17 17 C 1.52995 * 138.59126 * 238.40212 * 15 12 11 18 18 N 1.31397 * 109.68448 * 0.24051 * 11 10 9 19 19 N 1.37023 * 126.31724 * 359.97438 * 9 7 2 20 20 H 0.97007 * 127.01587 * 0.02562 * 19 9 7 21 21 H 0.96998 * 120.00280 * 359.97438 * 1 2 3 22 22 H 1.09003 * 117.49779 * 0.02562 * 14 12 11 23 23 H 1.08995 * 117.49866 * 145.02578 * 14 12 11 24 24 H 1.08999 * 117.49666 * 336.58848 * 16 15 12 25 25 H 1.08996 * 117.50179 * 121.61648 * 16 15 12 26 26 H 1.08997 * 117.50099 * 238.38532 * 17 15 12 27 27 H 1.08997 * 117.49254 * 23.38548 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.4879 2.0465 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5379 1.4403 0.7000 7 6 2.0078 -1.2147 0.0005 8 1 3.0877 -1.2147 0.0001 9 6 1.3060 -2.4304 0.0005 10 7 1.8405 -3.6489 0.0005 11 6 0.8811 -4.5589 0.0011 12 6 1.0993 -6.0500 0.0007 13 1 2.0447 -6.3867 -0.4247 14 6 -0.1255 -6.9437 -0.2041 15 6 0.5294 -6.8477 1.1753 16 6 0.1140 -6.6116 2.6287 17 6 1.0295 -7.7856 2.2757 18 7 -0.2914 -3.9658 -0.0037 19 7 -0.0559 -2.5812 0.0005 20 1 -0.7217 -1.8756 0.0002 21 1 -0.4850 0.8400 0.0004 22 1 -1.0896 -6.4532 -0.3391 23 1 0.0140 -7.8682 -0.7643 24 1 0.5604 -5.7638 3.1483 25 1 -0.9161 -6.8410 2.9014 26 1 0.6017 -8.7873 2.3162 27 1 2.0783 -7.7103 2.5627 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575554949.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:25 Heat of formation + Delta-G solvation = 118.818984 kcal Electronic energy + Delta-G solvation = -12572.016227 eV Core-core repulsion = 10332.675683 eV Total energy + Delta-G solvation = -2239.340545 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.83675 -37.63968 -34.00268 -32.40081 -30.16930 -29.28232 -25.94580 -23.08789 -22.08265 -20.43423 -19.42752 -17.99121 -17.52013 -15.44247 -15.15797 -14.69281 -14.49095 -13.83890 -13.39506 -13.10245 -11.88506 -11.49450 -11.43358 -11.25464 -11.21586 -11.06855 -10.49737 -9.98665 -9.86357 -9.61942 -9.54541 -9.48862 -8.17246 -8.16333 -7.86882 -7.14252 -4.87625 2.83371 2.97507 3.04113 3.39017 3.76422 3.92128 4.04417 4.45646 4.73430 4.88412 5.15883 5.26503 5.41844 5.84507 5.87408 5.97027 6.05452 6.13447 6.17406 6.23520 6.45623 6.58228 6.95726 7.01039 7.60698 8.06248 8.22885 8.48973 8.55569 9.40463 9.92090 10.16025 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.068308 B = 0.007502 C = 0.007376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.807242 B = 3731.334868 C = 3795.197485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.073 3.927 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.428 4.428 8 H 0.103 0.897 9 C 0.411 3.589 10 N -0.628 5.628 11 C 0.238 3.762 12 C 0.002 3.998 13 H 0.117 0.883 14 C -0.115 4.115 15 C -0.214 4.214 16 C -0.125 4.125 17 C -0.133 4.133 18 N -0.400 5.400 19 N -0.507 5.507 20 H 0.439 0.561 21 H 0.292 0.708 22 H 0.103 0.897 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 -5.317 1.819 5.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.144 4.144 3 Si 0.768 3.232 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.469 4.469 8 H 0.121 0.879 9 C 0.156 3.844 10 N -0.366 5.366 11 C -0.044 4.044 12 C -0.018 4.018 13 H 0.135 0.865 14 C -0.152 4.152 15 C -0.216 4.216 16 C -0.162 4.162 17 C -0.169 4.169 18 N -0.235 5.235 19 N -0.233 5.233 20 H 0.293 0.707 21 H 0.104 0.896 22 H 0.121 0.879 23 H 0.113 0.887 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.430 -5.650 1.810 5.948 hybrid contribution -0.105 1.478 0.000 1.482 sum -0.535 -4.172 1.810 4.579 Atomic orbital electron populations 1.68747 1.08031 1.30665 1.39466 1.26053 0.94905 1.02390 0.91077 0.85694 0.79896 0.78186 0.79382 1.19130 1.20074 1.18158 1.18673 0.95449 0.86374 1.46392 0.87937 1.20790 0.81231 0.92746 0.89584 1.70643 1.32212 0.97550 1.36218 1.22388 0.88006 0.94157 0.99887 1.19642 0.97757 0.85551 0.98869 0.86534 1.22727 0.97923 1.00091 0.94503 1.21405 1.07665 1.05206 0.87283 1.22496 0.99402 0.99385 0.94928 1.22646 0.99596 0.94498 1.00196 1.77535 1.22341 0.89285 1.34368 1.48673 1.08026 1.04177 1.62440 0.70657 0.89592 0.87861 0.88744 0.88988 0.89068 0.88991 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.47 10.72 55.56 0.60 -19.88 15 2 C 0.07 1.76 5.50 -17.30 -0.10 1.66 15 3 Si 0.94 18.08 29.56 -169.99 -5.03 13.05 15 4 H -0.27 -5.02 7.11 56.52 0.40 -4.62 15 5 H -0.28 -5.12 7.11 56.52 0.40 -4.72 15 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 7 C -0.43 -11.49 9.47 -38.02 -0.36 -11.85 15 8 H 0.10 2.65 7.85 -52.49 -0.41 2.24 15 9 C 0.41 11.80 7.67 -155.88 -1.20 10.61 15 10 N -0.63 -17.82 11.24 -10.11 -0.11 -17.93 15 11 C 0.24 6.18 7.64 -157.16 -1.20 4.98 15 12 C 0.00 0.05 6.33 -91.77 -0.58 -0.53 15 13 H 0.12 2.21 8.14 -51.93 -0.42 1.79 15 14 C -0.11 -1.96 10.13 -26.73 -0.27 -2.24 15 15 C -0.21 -3.78 5.38 -154.52 -0.83 -4.61 15 16 C -0.13 -2.07 10.53 -26.73 -0.28 -2.35 15 17 C -0.13 -1.88 10.53 -26.73 -0.28 -2.16 15 18 N -0.40 -10.75 12.31 32.36 0.40 -10.35 15 19 N -0.51 -14.15 7.16 31.10 0.22 -13.92 15 20 H 0.44 11.88 6.38 -182.32 -1.16 10.71 15 21 H 0.29 6.42 8.29 -40.82 -0.34 6.08 15 22 H 0.10 1.90 7.86 -51.93 -0.41 1.49 15 23 H 0.09 1.31 8.14 -51.93 -0.42 0.88 15 24 H 0.09 1.65 8.14 -51.93 -0.42 1.23 15 25 H 0.09 1.36 8.14 -51.93 -0.42 0.94 15 26 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 LS Contribution 244.73 15.07 3.69 3.69 Total: -1.00 -29.81 244.73 -8.98 -38.79 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -3.65 Total: 13.04 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -5.10 Total: -6.49 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 1.10 Total: -62.08 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.81 -8.98 -38.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575554949.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.614 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds