Wall clock time and date at job start Mon Mar 30 2020 02:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86804 * 120.00043 * 2 1 4 4 H 1.48505 * 109.46887 * 270.00399 * 3 2 1 5 5 H 1.48497 * 109.46902 * 29.99802 * 3 2 1 6 6 H 1.48492 * 109.47371 * 149.99902 * 3 2 1 7 7 C 1.40267 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00068 * 179.97438 * 7 2 1 9 9 C 1.40367 * 120.00044 * 0.02562 * 7 2 1 10 10 N 1.33066 * 126.31598 * 179.97438 * 9 7 2 11 11 C 1.32230 * 109.79966 * 179.97438 * 10 9 7 12 12 C 1.50700 * 125.15907 * 179.97438 * 11 10 9 13 13 H 1.09002 * 115.54929 * 334.41592 * 12 11 10 14 14 C 1.53003 * 117.52101 * 188.71399 * 12 11 10 15 15 C 1.52991 * 117.50008 * 120.08473 * 12 11 10 16 16 C 1.52994 * 138.58981 * 336.62595 * 15 12 11 17 17 C 1.52995 * 138.59126 * 238.40212 * 15 12 11 18 18 N 1.31397 * 109.68448 * 0.24051 * 11 10 9 19 19 N 1.37023 * 126.31724 * 359.97438 * 9 7 2 20 20 H 0.97007 * 127.01587 * 0.02562 * 19 9 7 21 21 H 0.96998 * 120.00280 * 359.97438 * 1 2 3 22 22 H 1.09003 * 117.49779 * 0.02562 * 14 12 11 23 23 H 1.08995 * 117.49866 * 145.02578 * 14 12 11 24 24 H 1.08999 * 117.49666 * 336.58848 * 16 15 12 25 25 H 1.08996 * 117.50179 * 121.61648 * 16 15 12 26 26 H 1.08997 * 117.50099 * 238.38532 * 17 15 12 27 27 H 1.08997 * 117.49254 * 23.38548 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.4879 2.0465 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5379 1.4403 0.7000 7 6 2.0078 -1.2147 0.0005 8 1 3.0877 -1.2147 0.0001 9 6 1.3060 -2.4304 0.0005 10 7 1.8405 -3.6489 0.0005 11 6 0.8811 -4.5589 0.0011 12 6 1.0993 -6.0500 0.0007 13 1 2.0447 -6.3867 -0.4247 14 6 -0.1255 -6.9437 -0.2041 15 6 0.5294 -6.8477 1.1753 16 6 0.1140 -6.6116 2.6287 17 6 1.0295 -7.7856 2.2757 18 7 -0.2914 -3.9658 -0.0037 19 7 -0.0559 -2.5812 0.0005 20 1 -0.7217 -1.8756 0.0002 21 1 -0.4850 0.8400 0.0004 22 1 -1.0896 -6.4532 -0.3391 23 1 0.0140 -7.8682 -0.7643 24 1 0.5604 -5.7638 3.1483 25 1 -0.9161 -6.8410 2.9014 26 1 0.6017 -8.7873 2.3162 27 1 2.0783 -7.7103 2.5627 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575554949.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:25 Heat of formation + Delta-G solvation = 100.775614 kcal Electronic energy + Delta-G solvation = -12572.798647 eV Core-core repulsion = 10332.675683 eV Total energy + Delta-G solvation = -2240.122964 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.83983 -39.04341 -35.92579 -33.86372 -32.23815 -31.21882 -27.96142 -24.79441 -23.29081 -22.38308 -20.96357 -19.90816 -19.29318 -17.45464 -16.88396 -16.04382 -15.82155 -15.54043 -15.31843 -14.85838 -13.59830 -13.46238 -13.04148 -12.73953 -12.63034 -12.35955 -12.07159 -11.86771 -11.60825 -11.18566 -10.97770 -10.83520 -10.26867 -10.24945 -9.82208 -9.02103 -6.93741 1.13292 1.40028 1.57465 1.61547 2.14678 2.17542 2.62943 2.84865 2.94205 3.25610 3.52997 3.68576 3.97747 4.25054 4.58185 4.62108 4.73696 4.78879 4.84696 4.97567 5.00897 5.04639 5.25638 5.30887 5.59174 6.02555 6.19504 6.49258 6.55698 7.31026 8.01178 8.14474 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.068308 B = 0.007502 C = 0.007376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.807242 B = 3731.334868 C = 3795.197485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.037 3.963 3 Si 1.026 2.974 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.255 1.255 7 C -0.459 4.459 8 H 0.103 0.897 9 C 0.382 3.618 10 N -0.661 5.661 11 C 0.237 3.763 12 C -0.036 4.036 13 H 0.127 0.873 14 C -0.090 4.090 15 C -0.230 4.230 16 C -0.144 4.144 17 C -0.092 4.092 18 N -0.420 5.420 19 N -0.522 5.522 20 H 0.437 0.563 21 H 0.307 0.693 22 H 0.085 0.915 23 H 0.135 0.865 24 H 0.066 0.934 25 H 0.106 0.894 26 H 0.129 0.871 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 -5.614 2.110 6.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.178 4.178 3 Si 0.844 3.156 4 H -0.181 1.181 5 H -0.185 1.185 6 H -0.179 1.179 7 C -0.500 4.500 8 H 0.121 0.879 9 C 0.129 3.871 10 N -0.401 5.401 11 C -0.045 4.045 12 C -0.056 4.056 13 H 0.144 0.856 14 C -0.128 4.128 15 C -0.232 4.232 16 C -0.181 4.181 17 C -0.129 4.129 18 N -0.256 5.256 19 N -0.249 5.249 20 H 0.291 0.709 21 H 0.119 0.881 22 H 0.103 0.897 23 H 0.153 0.847 24 H 0.085 0.915 25 H 0.124 0.876 26 H 0.147 0.853 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.135 -5.975 2.101 6.335 hybrid contribution -0.244 1.599 -0.066 1.619 sum -0.379 -4.376 2.035 4.841 Atomic orbital electron populations 1.68746 1.09431 1.32619 1.37422 1.27152 0.95770 1.05566 0.89324 0.84534 0.78396 0.72834 0.79881 1.18122 1.18450 1.17854 1.19047 0.95796 0.87180 1.47952 0.87910 1.21352 0.81859 0.93703 0.90174 1.70660 1.33277 0.98128 1.38007 1.23369 0.87130 0.96403 0.97616 1.19848 0.99992 0.82873 1.02932 0.85564 1.22747 0.95311 1.00139 0.94566 1.21621 1.07671 1.06228 0.87651 1.22592 1.00988 1.00381 0.94144 1.22829 0.99703 0.94944 0.95379 1.77467 1.23116 0.88979 1.36014 1.48655 1.07760 1.04611 1.63836 0.70913 0.88074 0.89693 0.84710 0.91504 0.87554 0.85323 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -41.58 10.72 21.88 0.23 -41.35 15 2 C 0.04 1.79 5.50 85.36 0.47 2.26 15 3 Si 1.03 35.87 29.56 68.60 2.03 37.89 15 4 H -0.26 -8.61 7.11 99.48 0.71 -7.90 15 5 H -0.26 -8.44 7.11 99.48 0.71 -7.74 15 6 H -0.26 -8.77 7.11 99.48 0.71 -8.06 15 7 C -0.46 -25.22 9.47 23.28 0.22 -25.00 15 8 H 0.10 5.45 7.85 -2.91 -0.02 5.43 15 9 C 0.38 22.75 7.67 133.83 1.03 23.77 15 10 N -0.66 -38.97 11.24 -185.91 -2.09 -41.06 15 11 C 0.24 12.69 7.64 138.74 1.06 13.75 15 12 C -0.04 -1.47 6.33 -11.54 -0.07 -1.54 15 13 H 0.13 4.77 8.14 -2.39 -0.02 4.75 15 14 C -0.09 -2.95 10.13 30.59 0.31 -2.64 15 15 C -0.23 -7.79 5.38 -52.19 -0.28 -8.07 15 16 C -0.14 -4.62 10.53 30.59 0.32 -4.29 15 17 C -0.09 -2.30 10.53 30.59 0.32 -1.98 15 18 N -0.42 -23.43 12.31 -51.55 -0.63 -24.06 15 19 N -0.52 -30.26 7.16 -55.51 -0.40 -30.66 15 20 H 0.44 24.51 6.38 -213.08 -1.36 23.15 15 21 H 0.31 13.16 8.29 -92.71 -0.77 12.39 15 22 H 0.08 3.09 7.86 -2.39 -0.02 3.07 15 23 H 0.13 3.26 8.14 -2.39 -0.02 3.24 15 24 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 25 H 0.11 3.03 8.14 -2.39 -0.02 3.01 15 26 H 0.13 2.35 8.14 -2.39 -0.02 2.33 15 27 H 0.10 2.41 8.14 -2.39 -0.02 2.39 15 Total: -1.00 -66.84 244.73 2.35 -64.49 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: -0.17 Total: 38.49 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 3.38 Total: -3.74 kcal Atomic # 7 Polarization: -134.24 SS G_CDS: -2.89 Total: -137.13 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 2.03 Total: 37.89 kcal Total: -66.84 2.35 -64.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575554949.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.261 kcal (2) G-P(sol) polarization free energy of solvation -66.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds