Wall clock time and date at job start Mon Mar 30 2020 02:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47213 * 2 1 4 4 C 1.37680 * 120.05405 * 90.00396 * 3 2 1 5 5 C 1.50700 * 119.83673 * 359.97438 * 4 3 2 6 6 C 1.38478 * 120.32596 * 179.72358 * 4 3 2 7 7 C 1.39326 * 120.42480 * 0.24966 * 6 4 3 8 8 N 1.39688 * 119.95198 * 179.97438 * 7 6 4 9 9 C 1.38277 * 120.09831 * 0.02562 * 7 6 4 10 10 C 1.40606 * 119.67364 * 359.97438 * 9 7 6 11 11 C 1.41407 * 120.20814 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00011 * 205.38405 * 11 10 9 13 13 C 1.39927 * 119.99936 * 25.38132 * 11 10 9 14 14 N 1.30832 * 120.00310 * 15.34341 * 13 11 10 15 15 Si 1.86803 * 119.99992 * 195.34373 * 13 11 10 16 16 H 1.48505 * 109.47253 * 60.00422 * 15 13 11 17 17 H 1.48503 * 109.47074 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47087 * 300.00228 * 15 13 11 19 19 H 1.08999 * 109.46862 * 300.00119 * 1 2 3 20 20 H 1.09005 * 109.46613 * 59.99752 * 1 2 3 21 21 H 1.08999 * 109.47413 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46862 * 239.99880 * 2 1 3 23 23 H 1.08996 * 109.46891 * 120.00230 * 2 1 3 24 24 H 1.09000 * 109.47516 * 269.72776 * 5 4 3 25 25 H 1.08998 * 109.47557 * 29.72989 * 5 4 3 26 26 H 1.09001 * 109.47535 * 149.73080 * 5 4 3 27 27 H 1.07999 * 119.78796 * 180.27562 * 6 4 3 28 28 H 0.96996 * 120.00348 * 0.02562 * 8 7 6 29 29 H 0.96999 * 119.99607 * 179.97438 * 8 7 6 30 30 H 1.08006 * 120.16780 * 179.97438 * 9 7 6 31 31 H 0.96994 * 120.00275 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0709 1.1917 5 6 2.0099 1.3583 2.4954 6 6 2.7294 3.3745 1.1983 7 6 2.9670 4.0449 0.0002 8 7 3.4376 5.3600 0.0184 9 6 2.7366 3.4107 -1.2068 10 6 2.2624 2.0871 -1.2183 11 6 2.0235 1.4276 -2.4461 12 1 1.3082 0.6199 -2.4950 13 6 2.7139 1.8214 -3.5977 14 7 3.7786 2.5751 -3.4966 15 14 2.1155 1.2711 -5.2795 16 1 0.7344 1.7698 -5.5012 17 1 3.0139 1.8179 -6.3279 18 1 2.1228 -0.2124 -5.3465 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 0.9817 1.5334 2.8120 25 1 2.1718 0.2887 2.3622 26 1 2.6934 1.7374 3.2550 27 1 2.9110 3.8746 2.1381 28 1 3.5991 5.8057 0.8646 29 1 3.6036 5.8272 -0.8153 30 1 2.9201 3.9295 -2.1361 31 1 4.2573 2.8477 -4.2949 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575719061.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:44 Heat of formation + Delta-G solvation = -3.932359 kcal Electronic energy + Delta-G solvation = -13262.057636 eV Core-core repulsion = 11120.934537 eV Total energy + Delta-G solvation = -2141.123099 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.10246 -34.49998 -33.80505 -31.34387 -30.49229 -27.32174 -25.46964 -25.12547 -22.03528 -20.39348 -18.86181 -16.99327 -15.75184 -15.15275 -14.49467 -14.07018 -13.88586 -12.95107 -12.68864 -12.23646 -12.05592 -11.83970 -11.52946 -11.25500 -11.24137 -10.96606 -10.93656 -10.43470 -10.36621 -10.02628 -9.27066 -9.25070 -9.17775 -8.60710 -7.12824 -6.65863 -6.03961 -4.25216 2.92207 3.11353 3.14897 3.21818 3.39349 4.01319 4.76888 5.05445 5.76281 5.99041 6.09358 6.11909 6.25021 6.33502 6.54054 6.61832 6.64011 6.77486 6.90781 7.03697 7.14279 7.23212 7.29001 7.54448 7.57735 7.96857 8.10076 8.19551 8.30190 8.59039 8.83523 9.00630 9.08370 9.19313 10.32423 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.027733 B = 0.013680 C = 0.009635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.369751 B = 2046.355807 C = 2905.398846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.219 4.219 4 C -0.034 4.034 5 C -0.105 4.105 6 C -0.297 4.297 7 C 0.212 3.788 8 N -0.895 5.895 9 C -0.236 4.236 10 C 0.147 3.853 11 C -0.459 4.459 12 H 0.079 0.921 13 C 0.076 3.924 14 N -0.796 5.796 15 Si 0.902 3.098 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.266 1.266 19 H 0.042 0.958 20 H 0.054 0.946 21 H 0.035 0.965 22 H 0.062 0.938 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.380 0.620 29 H 0.386 0.614 30 H 0.118 0.882 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.122 -0.088 3.238 3.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 C -0.222 4.222 4 C -0.034 4.034 5 C -0.162 4.162 6 C -0.320 4.320 7 C 0.111 3.889 8 N -0.436 5.436 9 C -0.260 4.260 10 C 0.143 3.857 11 C -0.489 4.489 12 H 0.097 0.903 13 C -0.140 4.140 14 N -0.422 5.422 15 Si 0.727 3.273 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.191 1.191 19 H 0.061 0.939 20 H 0.073 0.927 21 H 0.054 0.946 22 H 0.081 0.919 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.205 0.795 29 H 0.212 0.788 30 H 0.135 0.865 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.963 -0.078 3.092 3.663 hybrid contribution 0.045 0.295 -0.827 0.879 sum -1.918 0.216 2.265 2.976 Atomic orbital electron populations 1.21719 0.97380 0.99202 1.01415 1.20115 0.94028 0.95046 1.00330 1.19383 1.14693 0.95712 0.92367 1.18897 0.97959 0.93300 0.93287 1.20729 1.00090 0.99866 0.95520 1.19659 1.21187 0.96857 0.94293 1.17662 0.93091 0.83744 0.94357 1.42333 1.78701 1.13830 1.08717 1.20757 1.14503 0.96199 0.94562 1.17152 0.86991 0.90100 0.91421 1.19526 1.20995 1.16080 0.92319 0.90335 1.25881 0.93478 0.93661 1.01027 1.69858 1.12861 1.28423 1.31024 0.86471 0.79714 0.79862 0.81223 1.18991 1.20565 1.19103 0.93880 0.92689 0.94611 0.91904 0.93706 0.92929 0.92273 0.93521 0.89957 0.79451 0.78777 0.86465 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.86 37.16 0.37 -2.25 16 2 C -0.06 -1.23 5.03 -27.88 -0.14 -1.37 16 3 C -0.22 -5.35 5.19 -103.88 -0.54 -5.89 16 4 C -0.03 -0.77 5.87 -104.74 -0.61 -1.39 16 5 C -0.11 -1.94 9.60 36.01 0.35 -1.60 16 6 C -0.30 -6.90 9.55 -39.09 -0.37 -7.27 16 7 C 0.21 5.08 6.74 -83.86 -0.57 4.51 16 8 N -0.90 -17.31 9.09 32.37 0.29 -17.01 16 9 C -0.24 -6.27 8.52 -38.67 -0.33 -6.60 16 10 C 0.15 3.94 5.57 -106.85 -0.60 3.35 16 11 C -0.46 -12.19 8.13 -37.74 -0.31 -12.50 16 12 H 0.08 2.00 6.53 -52.49 -0.34 1.66 16 13 C 0.08 1.94 5.19 -17.35 -0.09 1.85 16 14 N -0.80 -20.93 10.87 55.55 0.60 -20.33 16 15 Si 0.90 19.03 29.59 -169.99 -5.03 14.00 16 16 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 20 H 0.05 1.09 7.84 -51.93 -0.41 0.69 16 21 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 1.39 6.78 -51.93 -0.35 1.04 16 23 H 0.04 0.86 5.92 -51.93 -0.31 0.55 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.06 1.03 5.91 -51.93 -0.31 0.72 16 26 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 28 H 0.38 6.25 8.84 -40.82 -0.36 5.89 16 29 H 0.39 6.94 8.84 -40.82 -0.36 6.58 16 30 H 0.12 3.22 6.13 -52.48 -0.32 2.90 16 31 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 LS Contribution 255.77 15.07 3.85 3.85 Total: -1.00 -28.17 255.77 -7.12 -35.30 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -4.00 Total: 13.35 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -2.84 Total: -29.16 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.90 Total: -37.34 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.17 -7.12 -35.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719061.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.367 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds