Wall clock time and date at job start Mon Mar 30 2020 02:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47213 * 2 1 4 4 C 1.37680 * 120.05405 * 90.00396 * 3 2 1 5 5 C 1.50700 * 119.83673 * 359.97438 * 4 3 2 6 6 C 1.38478 * 120.32596 * 179.72358 * 4 3 2 7 7 C 1.39326 * 120.42480 * 0.24966 * 6 4 3 8 8 N 1.39688 * 119.95198 * 179.97438 * 7 6 4 9 9 C 1.38277 * 120.09831 * 0.02562 * 7 6 4 10 10 C 1.40606 * 119.67364 * 359.97438 * 9 7 6 11 11 C 1.41407 * 120.20814 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00011 * 205.38405 * 11 10 9 13 13 C 1.39927 * 119.99936 * 25.38132 * 11 10 9 14 14 N 1.30832 * 120.00310 * 15.34341 * 13 11 10 15 15 Si 1.86803 * 119.99992 * 195.34373 * 13 11 10 16 16 H 1.48505 * 109.47253 * 60.00422 * 15 13 11 17 17 H 1.48503 * 109.47074 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47087 * 300.00228 * 15 13 11 19 19 H 1.08999 * 109.46862 * 300.00119 * 1 2 3 20 20 H 1.09005 * 109.46613 * 59.99752 * 1 2 3 21 21 H 1.08999 * 109.47413 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46862 * 239.99880 * 2 1 3 23 23 H 1.08996 * 109.46891 * 120.00230 * 2 1 3 24 24 H 1.09000 * 109.47516 * 269.72776 * 5 4 3 25 25 H 1.08998 * 109.47557 * 29.72989 * 5 4 3 26 26 H 1.09001 * 109.47535 * 149.73080 * 5 4 3 27 27 H 1.07999 * 119.78796 * 180.27562 * 6 4 3 28 28 H 0.96996 * 120.00348 * 0.02562 * 8 7 6 29 29 H 0.96999 * 119.99607 * 179.97438 * 8 7 6 30 30 H 1.08006 * 120.16780 * 179.97438 * 9 7 6 31 31 H 0.96994 * 120.00275 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0709 1.1917 5 6 2.0099 1.3583 2.4954 6 6 2.7294 3.3745 1.1983 7 6 2.9670 4.0449 0.0002 8 7 3.4376 5.3600 0.0184 9 6 2.7366 3.4107 -1.2068 10 6 2.2624 2.0871 -1.2183 11 6 2.0235 1.4276 -2.4461 12 1 1.3082 0.6199 -2.4950 13 6 2.7139 1.8214 -3.5977 14 7 3.7786 2.5751 -3.4966 15 14 2.1155 1.2711 -5.2795 16 1 0.7344 1.7698 -5.5012 17 1 3.0139 1.8179 -6.3279 18 1 2.1228 -0.2124 -5.3465 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 0.9817 1.5334 2.8120 25 1 2.1718 0.2887 2.3622 26 1 2.6934 1.7374 3.2550 27 1 2.9110 3.8746 2.1381 28 1 3.5991 5.8057 0.8646 29 1 3.6036 5.8272 -0.8153 30 1 2.9201 3.9295 -2.1361 31 1 4.2573 2.8477 -4.2949 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719061.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:43 Heat of formation + Delta-G solvation = -20.409137 kcal Electronic energy + Delta-G solvation = -13262.772123 eV Core-core repulsion = 11120.934537 eV Total energy + Delta-G solvation = -2141.837586 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.90397 -36.22733 -35.66231 -32.98273 -32.29669 -29.04130 -27.18622 -26.97063 -23.70818 -22.23267 -20.63531 -18.87111 -17.48636 -16.97582 -16.22458 -15.80157 -15.54023 -14.56955 -14.45901 -13.87311 -13.71852 -13.47618 -13.27883 -12.94550 -12.81788 -12.63715 -12.59830 -12.21243 -12.10050 -11.67544 -11.09322 -11.01756 -10.97899 -10.36056 -9.02391 -8.55149 -7.82120 -6.23080 1.13276 1.38222 1.38948 1.49291 1.61837 2.24637 2.87106 3.44557 3.87582 4.39466 4.52205 4.62537 4.69963 4.85226 4.89044 5.01410 5.15059 5.21195 5.26836 5.31288 5.32745 5.48169 5.63789 5.69994 5.78570 6.07778 6.26361 6.37752 6.45481 6.71343 7.00614 7.15503 7.30575 7.41082 8.44896 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.027733 B = 0.013680 C = 0.009635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.369751 B = 2046.355807 C = 2905.398846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 C -0.240 4.240 4 C -0.041 4.041 5 C -0.100 4.100 6 C -0.307 4.307 7 C 0.208 3.792 8 N -0.881 5.881 9 C -0.270 4.270 10 C 0.114 3.886 11 C -0.488 4.488 12 H 0.078 0.922 13 C 0.033 3.967 14 N -0.829 5.829 15 Si 0.973 3.027 16 H -0.263 1.263 17 H -0.272 1.272 18 H -0.259 1.259 19 H 0.051 0.949 20 H 0.033 0.967 21 H 0.064 0.936 22 H 0.043 0.957 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.397 0.603 29 H 0.392 0.608 30 H 0.097 0.903 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 -0.631 4.297 5.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C -0.242 4.242 4 C -0.041 4.041 5 C -0.157 4.157 6 C -0.331 4.331 7 C 0.105 3.895 8 N -0.423 5.423 9 C -0.295 4.295 10 C 0.111 3.889 11 C -0.518 4.518 12 H 0.096 0.904 13 C -0.180 4.180 14 N -0.455 5.455 15 Si 0.795 3.205 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.184 1.184 19 H 0.070 0.930 20 H 0.052 0.948 21 H 0.083 0.917 22 H 0.062 0.938 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.124 0.876 28 H 0.225 0.775 29 H 0.219 0.781 30 H 0.115 0.885 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.509 -0.594 4.174 4.906 hybrid contribution 0.250 0.523 -1.038 1.189 sum -2.259 -0.071 3.137 3.866 Atomic orbital electron populations 1.21627 0.95533 1.00934 1.00786 1.20114 0.95596 0.93171 1.00360 1.19791 1.14918 0.97331 0.92206 1.19447 0.96346 0.93474 0.94872 1.20746 1.01615 0.99960 0.93364 1.20045 1.20815 0.97360 0.94833 1.17818 0.92460 0.85235 0.93962 1.42210 1.77594 1.12396 1.10060 1.20725 1.17077 0.96836 0.94842 1.17590 0.87789 0.90700 0.92818 1.19752 1.21839 1.16851 0.93402 0.90427 1.26701 0.93215 0.93563 1.04554 1.69939 1.13856 1.29563 1.32189 0.85396 0.79109 0.79612 0.76429 1.18741 1.19637 1.18373 0.92973 0.94797 0.91665 0.93841 0.91567 0.91136 0.91249 0.91757 0.87554 0.77505 0.78078 0.88519 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.86 71.98 0.71 -4.00 16 2 C -0.06 -2.29 5.03 29.85 0.15 -2.14 16 3 C -0.24 -11.70 5.19 -19.38 -0.10 -11.80 16 4 C -0.04 -1.80 5.87 -19.94 -0.12 -1.92 16 5 C -0.10 -3.36 9.60 71.24 0.68 -2.67 16 6 C -0.31 -13.83 9.55 22.59 0.22 -13.61 16 7 C 0.21 9.93 6.74 38.16 0.26 10.19 16 8 N -0.88 -33.34 9.09 -51.49 -0.47 -33.81 16 9 C -0.27 -14.79 8.52 22.86 0.19 -14.60 16 10 C 0.11 6.30 5.57 -21.31 -0.12 6.18 16 11 C -0.49 -26.76 8.13 23.46 0.19 -26.57 16 12 H 0.08 4.09 6.53 -2.91 -0.02 4.07 16 13 C 0.03 1.73 5.19 85.25 0.44 2.18 16 14 N -0.83 -44.98 10.87 21.82 0.24 -44.74 16 15 Si 0.97 39.64 29.59 68.60 2.03 41.67 16 16 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 17 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 19 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 20 H 0.03 1.33 7.84 -2.38 -0.02 1.31 16 21 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.04 1.93 6.78 -2.39 -0.02 1.91 16 23 H 0.07 2.40 5.92 -2.39 -0.01 2.39 16 24 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.07 2.17 5.91 -2.39 -0.01 2.16 16 26 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 27 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 28 H 0.40 12.33 8.84 -92.71 -0.82 11.51 16 29 H 0.39 14.00 8.84 -92.71 -0.82 13.19 16 30 H 0.10 5.57 6.13 -2.91 -0.02 5.55 16 31 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 Total: -1.00 -61.53 255.77 3.82 -57.72 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: -0.49 Total: 37.94 kcal Atomic # 6 Polarization: -61.28 SS G_CDS: 2.51 Total: -58.77 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -0.23 Total: -78.55 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -61.53 3.82 -57.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719061.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.307 kcal (2) G-P(sol) polarization free energy of solvation -61.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds