Wall clock time and date at job start Mon Mar 30 2020 02:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47194 * 2 1 4 4 C 1.38898 * 119.69894 * 269.98036 * 3 2 1 5 5 C 1.38167 * 120.62136 * 180.02562 * 4 3 2 6 6 C 1.50707 * 119.98428 * 179.97438 * 5 4 3 7 7 C 1.38748 * 120.02948 * 359.71692 * 5 4 3 8 8 N 1.38725 * 120.29794 * 180.27733 * 7 5 4 9 9 C 1.41549 * 119.40954 * 0.57437 * 7 5 4 10 10 C 1.41037 * 120.30797 * 179.70060 * 9 7 5 11 11 H 1.08000 * 120.00282 * 334.21184 * 10 9 7 12 12 C 1.39924 * 120.00159 * 154.21311 * 10 9 7 13 13 N 1.30880 * 119.99825 * 334.57131 * 12 10 9 14 14 Si 1.86807 * 120.00178 * 154.57142 * 12 10 9 15 15 H 1.48498 * 109.47206 * 179.97438 * 14 12 10 16 16 H 1.48502 * 109.46684 * 300.00069 * 14 12 10 17 17 H 1.48493 * 109.47027 * 59.99948 * 14 12 10 18 18 C 1.36448 * 119.69863 * 90.00277 * 3 2 1 19 19 H 1.08996 * 109.46791 * 299.99858 * 1 2 3 20 20 H 1.09002 * 109.47051 * 59.99600 * 1 2 3 21 21 H 1.08999 * 109.47285 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47251 * 240.00077 * 2 1 3 23 23 H 1.08998 * 109.47219 * 119.99913 * 2 1 3 24 24 H 1.07995 * 119.69171 * 359.97334 * 4 3 2 25 25 H 1.08995 * 109.46999 * 90.00138 * 6 5 4 26 26 H 1.08999 * 109.46746 * 210.00279 * 6 5 4 27 27 H 1.09006 * 109.46997 * 329.99807 * 6 5 4 28 28 H 0.97001 * 120.00249 * 180.29878 * 8 7 5 29 29 H 0.96999 * 120.00451 * 0.30186 * 8 7 5 30 30 H 0.96995 * 120.00000 * 354.15580 * 13 12 10 31 31 H 1.07995 * 120.02748 * 359.97438 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2621 2.0695 -1.2065 5 6 2.7232 3.3718 -1.2288 6 6 2.9682 4.0617 -2.5461 7 6 2.9556 4.0465 -0.0389 8 7 3.4130 5.3561 -0.0547 9 6 2.7278 3.3846 1.1914 10 6 2.9639 4.0504 2.4122 11 1 3.6777 4.8596 2.4567 12 6 2.2732 3.6625 3.5656 13 7 1.1072 3.0769 3.4643 14 14 3.0155 3.9805 5.2501 15 1 2.0928 3.4795 6.3002 16 1 4.3183 3.2758 5.3579 17 1 3.2254 5.4393 5.4312 18 6 2.2578 2.0582 1.1853 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.0796 1.5508 -2.1360 25 1 2.0585 4.5709 -2.8642 26 1 3.7710 4.7899 -2.4310 27 1 3.2523 3.3230 -3.2957 28 1 3.5782 5.8223 0.7797 29 1 3.5676 5.8057 -0.9002 30 1 0.6830 2.9879 2.5965 31 1 2.0759 1.5450 2.1179 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575719221.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:46 Heat of formation + Delta-G solvation = -9.682635 kcal Electronic energy + Delta-G solvation = -13218.673491 eV Core-core repulsion = 11077.301042 eV Total energy + Delta-G solvation = -2141.372450 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.36117 -34.57064 -34.10299 -31.50193 -30.44467 -27.47493 -25.51580 -24.89943 -22.39414 -20.59824 -18.92326 -17.30106 -16.12383 -15.56731 -14.10844 -13.87772 -13.70334 -13.21302 -12.82128 -12.56925 -12.35616 -11.94890 -11.77134 -11.48864 -11.21506 -11.07037 -10.75342 -10.41838 -10.35399 -10.23667 -9.60086 -9.27783 -9.07648 -8.81310 -7.35647 -7.08554 -6.25449 -4.11654 2.86123 3.06954 3.21434 3.33191 3.41785 4.12534 4.68103 5.22028 5.53555 5.73937 5.78200 5.96727 6.04840 6.14279 6.30920 6.42286 6.44330 6.49670 6.58647 6.68269 6.86215 6.94739 7.28133 7.49054 7.64599 7.70975 7.96796 8.11280 8.27528 8.39047 8.62735 8.91475 9.10482 9.13490 10.24636 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.013295 C = 0.009362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.986911 B = 2105.620075 C = 2989.983119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.094 4.094 4 C -0.197 4.197 5 C -0.148 4.148 6 C -0.091 4.091 7 C 0.116 3.884 8 N -0.883 5.883 9 C 0.057 3.943 10 C -0.532 4.532 11 H 0.067 0.933 12 C 0.040 3.960 13 N -0.809 5.809 14 Si 1.061 2.939 15 H -0.276 1.276 16 H -0.277 1.277 17 H -0.280 1.280 18 C -0.192 4.192 19 H 0.055 0.945 20 H 0.049 0.951 21 H 0.042 0.958 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.390 0.610 29 H 0.377 0.623 30 H 0.298 0.702 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.372 -0.079 -3.982 4.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.096 4.096 4 C -0.217 4.217 5 C -0.154 4.154 6 C -0.148 4.148 7 C 0.015 3.985 8 N -0.425 5.425 9 C 0.052 3.948 10 C -0.562 4.562 11 H 0.085 0.915 12 C -0.180 4.180 13 N -0.433 5.433 14 Si 0.886 3.114 15 H -0.201 1.201 16 H -0.203 1.203 17 H -0.205 1.205 18 C -0.213 4.213 19 H 0.075 0.925 20 H 0.068 0.932 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.104 0.896 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.219 0.781 29 H 0.203 0.797 30 H 0.111 0.889 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.046 -0.419 -2.339 2.597 hybrid contribution 0.353 0.622 -1.708 1.852 sum 1.399 0.203 -4.047 4.287 Atomic orbital electron populations 1.21710 0.96153 0.99941 1.02007 1.20346 0.95170 0.94905 1.00524 1.18938 1.02439 0.94623 0.93558 1.19808 1.11471 0.94990 0.95414 1.18830 1.08915 0.95449 0.92158 1.20433 0.99739 0.99174 0.95500 1.17693 1.02657 0.85167 0.93029 1.41938 1.78773 1.13024 1.08783 1.17290 0.94722 0.91782 0.90984 1.20071 1.23523 1.18429 0.94171 0.91464 1.26771 0.94014 0.92426 1.04801 1.70448 1.11803 1.29602 1.31472 0.83699 0.76433 0.77132 0.74150 1.20094 1.20296 1.20531 1.20482 1.10337 0.94406 0.96070 0.92541 0.93195 0.93920 0.92959 0.92598 0.89620 0.93385 0.93525 0.93146 0.78109 0.79651 0.88881 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.89 37.16 0.37 -2.13 16 2 C -0.07 -1.41 6.04 -27.88 -0.17 -1.57 16 3 C -0.09 -2.20 5.10 -105.02 -0.54 -2.73 16 4 C -0.20 -4.47 9.33 -39.36 -0.37 -4.84 16 5 C -0.15 -3.34 5.89 -104.46 -0.62 -3.95 16 6 C -0.09 -1.64 9.56 36.01 0.34 -1.29 16 7 C 0.12 2.81 6.77 -83.29 -0.56 2.25 16 8 N -0.88 -18.14 8.88 32.72 0.29 -17.84 16 9 C 0.06 1.52 5.31 -106.63 -0.57 0.96 16 10 C -0.53 -14.14 8.43 -37.89 -0.32 -14.46 16 11 H 0.07 1.71 6.77 -52.49 -0.36 1.36 16 12 C 0.04 1.04 4.94 -17.33 -0.09 0.95 16 13 N -0.81 -22.00 12.32 55.55 0.68 -21.32 16 14 Si 1.06 22.17 30.00 -169.99 -5.10 17.07 16 15 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 17 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 18 C -0.19 -5.00 7.51 -39.29 -0.30 -5.30 16 19 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 20 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 23 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 24 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.76 6.57 -51.93 -0.34 0.42 16 27 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 28 H 0.39 7.92 7.06 -40.82 -0.29 7.63 16 29 H 0.38 6.57 6.83 -40.82 -0.28 6.30 16 30 H 0.30 8.36 6.69 -40.82 -0.27 8.09 16 31 H 0.10 2.82 6.49 -52.49 -0.34 2.48 16 LS Contribution 256.57 15.07 3.87 3.87 Total: -1.00 -28.09 256.57 -7.11 -35.20 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -4.05 Total: 15.16 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: -2.80 Total: -32.13 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.97 Total: -39.16 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.10 Total: 17.07 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.09 -7.11 -35.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719221.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.514 kcal (2) G-P(sol) polarization free energy of solvation -28.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds