Wall clock time and date at job start Mon Mar 30 2020 02:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47194 * 2 1 4 4 C 1.38898 * 119.69894 * 269.98036 * 3 2 1 5 5 C 1.38167 * 120.62136 * 180.02562 * 4 3 2 6 6 C 1.50707 * 119.98428 * 179.97438 * 5 4 3 7 7 C 1.38748 * 120.02948 * 359.71692 * 5 4 3 8 8 N 1.38725 * 120.29794 * 180.27733 * 7 5 4 9 9 C 1.41549 * 119.40954 * 0.57437 * 7 5 4 10 10 C 1.41037 * 120.30797 * 179.70060 * 9 7 5 11 11 H 1.08000 * 120.00282 * 334.21184 * 10 9 7 12 12 C 1.39924 * 120.00159 * 154.21311 * 10 9 7 13 13 N 1.30880 * 119.99825 * 334.57131 * 12 10 9 14 14 Si 1.86807 * 120.00178 * 154.57142 * 12 10 9 15 15 H 1.48498 * 109.47206 * 179.97438 * 14 12 10 16 16 H 1.48502 * 109.46684 * 300.00069 * 14 12 10 17 17 H 1.48493 * 109.47027 * 59.99948 * 14 12 10 18 18 C 1.36448 * 119.69863 * 90.00277 * 3 2 1 19 19 H 1.08996 * 109.46791 * 299.99858 * 1 2 3 20 20 H 1.09002 * 109.47051 * 59.99600 * 1 2 3 21 21 H 1.08999 * 109.47285 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47251 * 240.00077 * 2 1 3 23 23 H 1.08998 * 109.47219 * 119.99913 * 2 1 3 24 24 H 1.07995 * 119.69171 * 359.97334 * 4 3 2 25 25 H 1.08995 * 109.46999 * 90.00138 * 6 5 4 26 26 H 1.08999 * 109.46746 * 210.00279 * 6 5 4 27 27 H 1.09006 * 109.46997 * 329.99807 * 6 5 4 28 28 H 0.97001 * 120.00249 * 180.29878 * 8 7 5 29 29 H 0.96999 * 120.00451 * 0.30186 * 8 7 5 30 30 H 0.96995 * 120.00000 * 354.15580 * 13 12 10 31 31 H 1.07995 * 120.02748 * 359.97438 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2621 2.0695 -1.2065 5 6 2.7232 3.3718 -1.2288 6 6 2.9682 4.0617 -2.5461 7 6 2.9556 4.0465 -0.0389 8 7 3.4130 5.3561 -0.0547 9 6 2.7278 3.3846 1.1914 10 6 2.9639 4.0504 2.4122 11 1 3.6777 4.8596 2.4567 12 6 2.2732 3.6625 3.5656 13 7 1.1072 3.0769 3.4643 14 14 3.0155 3.9805 5.2501 15 1 2.0928 3.4795 6.3002 16 1 4.3183 3.2758 5.3579 17 1 3.2254 5.4393 5.4312 18 6 2.2578 2.0582 1.1853 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.0796 1.5508 -2.1360 25 1 2.0585 4.5709 -2.8642 26 1 3.7710 4.7899 -2.4310 27 1 3.2523 3.3230 -3.2957 28 1 3.5782 5.8223 0.7797 29 1 3.5676 5.8057 -0.9002 30 1 0.6830 2.9879 2.5965 31 1 2.0759 1.5450 2.1179 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719221.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:46 Heat of formation + Delta-G solvation = -25.630864 kcal Electronic energy + Delta-G solvation = -13219.365058 eV Core-core repulsion = 11077.301042 eV Total energy + Delta-G solvation = -2142.064017 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.17549 -36.26522 -35.98322 -33.13985 -32.20822 -29.21015 -27.19925 -26.78051 -24.01145 -22.46222 -20.66621 -19.20179 -17.85555 -17.36854 -15.87715 -15.55125 -15.32420 -14.89620 -14.43726 -14.25158 -14.05990 -13.56772 -13.48529 -13.17703 -12.74966 -12.67811 -12.40743 -12.17728 -11.97831 -11.81546 -11.32497 -11.11462 -10.83114 -10.71193 -9.25690 -9.09162 -8.05246 -6.10579 1.00396 1.21585 1.50930 1.65389 1.78931 2.38944 2.78939 3.55688 3.65532 4.19021 4.24278 4.43945 4.56271 4.63210 4.77188 4.90019 4.92554 4.98024 5.04378 5.07298 5.16229 5.39376 5.44762 5.60070 5.80653 5.86235 5.97214 6.20875 6.37374 6.54796 6.75892 7.04700 7.25242 7.46484 8.21571 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.013295 C = 0.009362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.986911 B = 2105.620075 C = 2989.983119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.071 4.071 3 C -0.107 4.107 4 C -0.195 4.195 5 C -0.157 4.157 6 C -0.088 4.088 7 C 0.102 3.898 8 N -0.872 5.872 9 C 0.019 3.981 10 C -0.560 4.560 11 H 0.069 0.931 12 C 0.000 4.000 13 N -0.835 5.835 14 Si 1.113 2.887 15 H -0.277 1.277 16 H -0.269 1.269 17 H -0.258 1.258 18 C -0.211 4.211 19 H 0.030 0.970 20 H 0.054 0.946 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.049 0.951 24 H 0.114 0.886 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.391 0.609 29 H 0.393 0.607 30 H 0.279 0.721 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 -0.036 -5.481 5.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.108 4.108 3 C -0.109 4.109 4 C -0.214 4.214 5 C -0.163 4.163 6 C -0.144 4.144 7 C -0.001 4.001 8 N -0.416 5.416 9 C 0.014 3.986 10 C -0.590 4.590 11 H 0.087 0.913 12 C -0.214 4.214 13 N -0.460 5.460 14 Si 0.931 3.069 15 H -0.202 1.202 16 H -0.195 1.195 17 H -0.183 1.183 18 C -0.231 4.231 19 H 0.049 0.951 20 H 0.073 0.927 21 H 0.093 0.907 22 H 0.096 0.904 23 H 0.068 0.932 24 H 0.132 0.868 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.219 0.781 29 H 0.223 0.777 30 H 0.091 0.909 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.584 -0.351 -3.877 4.203 hybrid contribution 0.200 0.573 -1.430 1.553 sum 1.784 0.223 -5.307 5.603 Atomic orbital electron populations 1.21645 0.94784 1.01757 1.00953 1.20389 0.96304 0.92695 1.01452 1.19358 1.01989 0.96557 0.93012 1.20262 1.09783 0.95270 0.96106 1.19413 1.07457 0.95678 0.93762 1.20471 1.00981 0.99798 0.93196 1.17920 1.02695 0.86523 0.92961 1.41828 1.78070 1.11899 1.09771 1.17672 0.96087 0.92500 0.92318 1.20266 1.24313 1.19349 0.95073 0.91308 1.28157 0.93516 0.91368 1.08325 1.70567 1.13002 1.32261 1.30134 0.83050 0.75730 0.78262 0.69809 1.20195 1.19457 1.18262 1.20461 1.11696 0.94789 0.96198 0.95062 0.92733 0.90670 0.90437 0.93176 0.86821 0.92014 0.92048 0.91147 0.78090 0.77710 0.90884 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 9.89 71.98 0.71 -3.87 16 2 C -0.07 -2.69 6.04 29.85 0.18 -2.51 16 3 C -0.11 -5.00 5.10 -20.12 -0.10 -5.10 16 4 C -0.19 -8.45 9.33 22.41 0.21 -8.24 16 5 C -0.16 -6.79 5.89 -19.76 -0.12 -6.91 16 6 C -0.09 -2.81 9.56 71.24 0.68 -2.13 16 7 C 0.10 4.88 6.77 38.99 0.26 5.14 16 8 N -0.87 -34.92 8.88 -50.39 -0.45 -35.37 16 9 C 0.02 1.04 5.31 -21.17 -0.11 0.93 16 10 C -0.56 -30.58 8.43 23.37 0.20 -30.39 16 11 H 0.07 3.58 6.77 -2.91 -0.02 3.56 16 12 C 0.00 0.01 4.94 85.24 0.42 0.43 16 13 N -0.83 -47.39 12.32 21.83 0.27 -47.12 16 14 Si 1.11 45.33 30.00 68.60 2.06 47.39 16 15 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 16 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 17 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 18 C -0.21 -11.33 7.51 22.46 0.17 -11.16 16 19 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 20 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.08 2.53 8.08 -2.39 -0.02 2.51 16 23 H 0.05 1.92 8.07 -2.39 -0.02 1.91 16 24 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.78 6.57 -2.39 -0.02 1.76 16 27 H 0.07 1.99 8.09 -2.38 -0.02 1.97 16 28 H 0.39 15.70 7.06 -92.71 -0.65 15.05 16 29 H 0.39 12.87 6.83 -92.71 -0.63 12.24 16 30 H 0.28 16.61 6.69 -92.71 -0.62 15.99 16 31 H 0.08 4.52 6.49 -2.91 -0.02 4.50 16 Total: -1.00 -61.91 256.57 4.38 -57.52 By element: Atomic # 1 Polarization: 41.39 SS G_CDS: 0.00 Total: 41.38 kcal Atomic # 6 Polarization: -66.31 SS G_CDS: 2.50 Total: -63.81 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -0.18 Total: -82.49 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.06 Total: 47.39 kcal Total: -61.91 4.38 -57.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719221.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.894 kcal (2) G-P(sol) polarization free energy of solvation -61.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds