Wall clock time and date at job start Mon Mar 30 2020 02:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.46988 * 2 1 4 4 C 1.38206 * 119.68751 * 264.72914 * 3 2 1 5 5 C 1.38712 * 120.02558 * 179.72374 * 4 3 2 6 6 N 1.38746 * 120.29397 * 180.29340 * 5 4 3 7 7 C 1.41575 * 119.41310 * 0.52419 * 5 4 3 8 8 C 1.41049 * 120.30653 * 179.72741 * 7 5 4 9 9 H 1.07997 * 119.99972 * 25.51389 * 8 7 5 10 10 C 1.39931 * 119.99481 * 205.51366 * 8 7 5 11 11 N 1.30873 * 120.00129 * 15.35991 * 10 8 7 12 12 Si 1.86797 * 119.99436 * 195.35781 * 10 8 7 13 13 H 1.48498 * 109.47668 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47070 * 120.00155 * 12 10 8 15 15 H 1.48508 * 109.47120 * 239.99989 * 12 10 8 16 16 C 1.40690 * 119.38648 * 359.75011 * 7 5 4 17 17 C 1.36493 * 119.95002 * 359.97438 * 16 7 5 18 18 C 1.50699 * 119.70161 * 179.97438 * 17 16 7 19 19 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46860 * 299.99532 * 1 2 3 21 21 H 1.09000 * 109.47368 * 59.99886 * 1 2 3 22 22 H 1.09000 * 109.47368 * 120.00114 * 2 1 3 23 23 H 1.09001 * 109.46860 * 240.00468 * 2 1 3 24 24 H 1.08006 * 119.98637 * 0.02562 * 4 3 2 25 25 H 0.97001 * 119.99653 * 180.23347 * 6 5 4 26 26 H 0.96996 * 119.99877 * 0.22889 * 6 5 4 27 27 H 0.97002 * 119.99571 * 180.02562 * 11 10 8 28 28 H 1.08000 * 120.02999 * 179.97438 * 16 7 5 29 29 H 1.08990 * 109.47390 * 269.98122 * 18 17 16 30 30 H 1.09000 * 109.46879 * 29.98063 * 18 17 16 31 31 H 1.08998 * 109.47345 * 149.97629 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3644 2.0294 -1.1956 5 6 2.8220 3.3388 -1.2043 6 7 3.1512 3.9572 -2.4019 7 6 2.9548 4.0371 0.0201 8 6 3.4238 5.3672 0.0337 9 1 3.2973 5.9933 -0.8371 10 6 4.0529 5.8756 1.1756 11 7 4.4767 5.0598 2.1071 12 14 4.2878 7.7185 1.3701 13 1 3.7255 8.4170 0.1865 14 1 3.5885 8.1799 2.5963 15 1 5.7369 8.0237 1.4822 16 6 2.6151 3.3917 1.2233 17 6 2.1620 2.1044 1.2016 18 6 1.8002 1.4183 2.4937 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 2.2630 1.4868 -2.1239 25 1 3.4740 4.8720 -2.4026 26 1 3.0587 3.4748 -3.2382 27 1 4.9125 5.4123 2.8988 28 1 2.7128 3.9144 2.1633 29 1 2.6781 0.9114 2.8941 30 1 1.4491 2.1588 3.2123 31 1 1.0118 0.6886 2.3094 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575719294.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:26 Heat of formation + Delta-G solvation = -3.556940 kcal Electronic energy + Delta-G solvation = -13160.846158 eV Core-core repulsion = 11019.739339 eV Total energy + Delta-G solvation = -2141.106820 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.18774 -34.76024 -33.46926 -31.78278 -29.51950 -28.76383 -25.38340 -24.45961 -22.21522 -20.49982 -19.06998 -16.83181 -15.91480 -15.28077 -14.60541 -13.94123 -13.60524 -13.20065 -12.54029 -12.36806 -12.31668 -11.79373 -11.66600 -11.34072 -11.14914 -10.98698 -10.94389 -10.67711 -10.25697 -10.21623 -9.50082 -9.26111 -9.06496 -8.76260 -7.17206 -6.62577 -6.13478 -4.04147 2.85791 3.13752 3.17881 3.26189 3.28626 4.03601 4.74029 5.29604 5.70109 5.75261 5.80536 6.09103 6.21176 6.33564 6.41933 6.49750 6.56731 6.61480 6.66171 6.77357 6.90479 7.13662 7.32989 7.41898 7.68737 7.83647 7.97249 8.31361 8.36324 8.62945 8.89155 8.93911 9.18375 9.25429 10.38477 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.041180 B = 0.010468 C = 0.008756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.777006 B = 2674.284224 C = 3197.167079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C -0.156 4.156 4 C -0.175 4.175 5 C 0.115 3.885 6 N -0.886 5.886 7 C 0.060 3.940 8 C -0.464 4.464 9 H 0.070 0.930 10 C 0.074 3.926 11 N -0.804 5.804 12 Si 0.902 3.098 13 H -0.264 1.264 14 H -0.275 1.275 15 H -0.278 1.278 16 C -0.132 4.132 17 C -0.114 4.114 18 C -0.098 4.098 19 H 0.039 0.961 20 H 0.053 0.947 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.390 0.610 26 H 0.376 0.624 27 H 0.275 0.725 28 H 0.119 0.881 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 -3.257 -1.922 4.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.158 4.158 4 C -0.199 4.199 5 C 0.013 3.987 6 N -0.427 5.427 7 C 0.055 3.945 8 C -0.496 4.496 9 H 0.088 0.912 10 C -0.141 4.141 11 N -0.432 5.432 12 Si 0.728 3.272 13 H -0.188 1.188 14 H -0.200 1.200 15 H -0.203 1.203 16 C -0.153 4.153 17 C -0.116 4.116 18 C -0.155 4.155 19 H 0.058 0.942 20 H 0.072 0.928 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.103 0.897 25 H 0.219 0.781 26 H 0.201 0.799 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.116 -3.276 -1.615 4.801 hybrid contribution 0.377 1.055 -0.209 1.139 sum -2.739 -2.221 -1.824 3.970 Atomic orbital electron populations 1.21768 0.96748 0.99625 1.01806 1.20202 0.94586 0.94995 1.00268 1.18698 1.09521 0.95081 0.92516 1.19813 1.09787 0.94241 0.96015 1.17946 1.01997 0.91765 0.86944 1.41867 1.78708 1.17208 1.04921 1.17229 0.94393 0.93431 0.89447 1.19156 1.34111 0.96885 0.99400 0.91218 1.25746 0.93642 0.99389 0.95363 1.69849 1.29289 1.35892 1.08142 0.86365 0.78298 0.83447 0.79109 1.18788 1.19990 1.20325 1.20725 1.02222 0.93788 0.98584 1.18921 1.04351 0.95482 0.92824 1.20636 0.99708 0.99225 0.95935 0.94187 0.92810 0.93199 0.92740 0.93327 0.89709 0.78132 0.79928 0.91422 0.86277 0.93369 0.93393 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.69 37.16 0.36 -1.91 16 2 C -0.06 -1.14 5.35 -27.89 -0.15 -1.29 16 3 C -0.16 -3.49 5.15 -104.41 -0.54 -4.03 16 4 C -0.18 -4.01 9.50 -39.42 -0.37 -4.38 16 5 C 0.11 2.79 6.79 -83.29 -0.57 2.23 16 6 N -0.89 -18.16 8.98 32.72 0.29 -17.87 16 7 C 0.06 1.60 5.59 -106.63 -0.60 1.01 16 8 C -0.46 -12.34 8.51 -37.88 -0.32 -12.66 16 9 H 0.07 1.76 6.69 -52.49 -0.35 1.41 16 10 C 0.07 1.89 5.18 -17.33 -0.09 1.80 16 11 N -0.80 -21.37 10.87 55.55 0.60 -20.77 16 12 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 13 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 16 C -0.13 -3.51 8.25 -39.29 -0.32 -3.83 16 17 C -0.11 -2.70 5.84 -105.02 -0.61 -3.32 16 18 C -0.10 -1.94 9.18 36.01 0.33 -1.61 16 19 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 20 H 0.05 0.87 6.89 -51.93 -0.36 0.52 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.05 0.94 6.95 -51.93 -0.36 0.58 16 23 H 0.05 0.83 8.04 -51.93 -0.42 0.41 16 24 H 0.08 1.75 8.06 -52.48 -0.42 1.32 16 25 H 0.39 7.85 7.06 -40.82 -0.29 7.56 16 26 H 0.38 6.49 8.84 -40.82 -0.36 6.13 16 27 H 0.27 6.70 8.30 -40.82 -0.34 6.36 16 28 H 0.12 3.29 6.13 -52.49 -0.32 2.97 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.05 0.88 5.36 -51.93 -0.28 0.60 16 LS Contribution 254.60 15.07 3.84 3.84 Total: -1.00 -28.09 254.60 -7.16 -35.24 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -3.98 Total: 13.42 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -2.88 Total: -27.99 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.90 Total: -38.64 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.09 -7.16 -35.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719294.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.685 kcal (2) G-P(sol) polarization free energy of solvation -28.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds