Wall clock time and date at job start Mon Mar 30 2020 02:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.46988 * 2 1 4 4 C 1.38206 * 119.68751 * 264.72914 * 3 2 1 5 5 C 1.38712 * 120.02558 * 179.72374 * 4 3 2 6 6 N 1.38746 * 120.29397 * 180.29340 * 5 4 3 7 7 C 1.41575 * 119.41310 * 0.52419 * 5 4 3 8 8 C 1.41049 * 120.30653 * 179.72741 * 7 5 4 9 9 H 1.07997 * 119.99972 * 25.51389 * 8 7 5 10 10 C 1.39931 * 119.99481 * 205.51366 * 8 7 5 11 11 N 1.30873 * 120.00129 * 15.35991 * 10 8 7 12 12 Si 1.86797 * 119.99436 * 195.35781 * 10 8 7 13 13 H 1.48498 * 109.47668 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47070 * 120.00155 * 12 10 8 15 15 H 1.48508 * 109.47120 * 239.99989 * 12 10 8 16 16 C 1.40690 * 119.38648 * 359.75011 * 7 5 4 17 17 C 1.36493 * 119.95002 * 359.97438 * 16 7 5 18 18 C 1.50699 * 119.70161 * 179.97438 * 17 16 7 19 19 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46860 * 299.99532 * 1 2 3 21 21 H 1.09000 * 109.47368 * 59.99886 * 1 2 3 22 22 H 1.09000 * 109.47368 * 120.00114 * 2 1 3 23 23 H 1.09001 * 109.46860 * 240.00468 * 2 1 3 24 24 H 1.08006 * 119.98637 * 0.02562 * 4 3 2 25 25 H 0.97001 * 119.99653 * 180.23347 * 6 5 4 26 26 H 0.96996 * 119.99877 * 0.22889 * 6 5 4 27 27 H 0.97002 * 119.99571 * 180.02562 * 11 10 8 28 28 H 1.08000 * 120.02999 * 179.97438 * 16 7 5 29 29 H 1.08990 * 109.47390 * 269.98122 * 18 17 16 30 30 H 1.09000 * 109.46879 * 29.98063 * 18 17 16 31 31 H 1.08998 * 109.47345 * 149.97629 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3644 2.0294 -1.1956 5 6 2.8220 3.3388 -1.2043 6 7 3.1512 3.9572 -2.4019 7 6 2.9548 4.0371 0.0201 8 6 3.4238 5.3672 0.0337 9 1 3.2973 5.9933 -0.8371 10 6 4.0529 5.8756 1.1756 11 7 4.4767 5.0598 2.1071 12 14 4.2878 7.7185 1.3701 13 1 3.7255 8.4170 0.1865 14 1 3.5885 8.1799 2.5963 15 1 5.7369 8.0237 1.4822 16 6 2.6151 3.3917 1.2233 17 6 2.1620 2.1044 1.2016 18 6 1.8002 1.4183 2.4937 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 2.2630 1.4868 -2.1239 25 1 3.4740 4.8720 -2.4026 26 1 3.0587 3.4748 -3.2382 27 1 4.9125 5.4123 2.8988 28 1 2.7128 3.9144 2.1633 29 1 2.6781 0.9114 2.8941 30 1 1.4491 2.1588 3.2123 31 1 1.0118 0.6886 2.3094 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719294.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:26 Heat of formation + Delta-G solvation = -19.761890 kcal Electronic energy + Delta-G solvation = -13161.548858 eV Core-core repulsion = 11019.739339 eV Total energy + Delta-G solvation = -2141.809519 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98379 -36.46675 -35.31812 -33.41646 -31.22574 -30.52887 -27.19340 -26.13687 -23.86723 -22.25699 -20.84067 -18.74004 -17.65842 -17.05905 -16.33623 -15.49737 -15.35344 -14.75214 -14.25788 -14.06584 -13.93986 -13.48856 -13.32635 -12.95600 -12.79205 -12.65974 -12.58522 -12.32622 -11.89518 -11.71562 -11.28231 -11.02932 -10.93507 -10.51040 -9.06171 -8.51689 -7.94998 -5.99478 1.07402 1.38627 1.39736 1.52366 1.53660 2.26227 2.85652 3.63673 3.84044 4.35223 4.38307 4.58001 4.71251 4.75325 4.82559 5.02557 5.06862 5.15115 5.18609 5.20155 5.27987 5.46719 5.54105 5.62047 5.83951 5.99526 6.11451 6.45616 6.48431 6.77961 6.99512 7.07290 7.35470 7.56214 8.51738 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.041180 B = 0.010468 C = 0.008756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.777006 B = 2674.284224 C = 3197.167079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 C -0.149 4.149 4 C -0.188 4.188 5 C 0.106 3.894 6 N -0.875 5.875 7 C 0.017 3.983 8 C -0.494 4.494 9 H 0.072 0.928 10 C 0.028 3.972 11 N -0.841 5.841 12 Si 0.975 3.025 13 H -0.259 1.259 14 H -0.271 1.271 15 H -0.271 1.271 16 C -0.156 4.156 17 C -0.134 4.134 18 C -0.092 4.092 19 H 0.071 0.929 20 H 0.047 0.953 21 H 0.044 0.956 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.110 0.890 25 H 0.392 0.608 26 H 0.393 0.607 27 H 0.279 0.721 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.903 -4.242 -2.602 6.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.211 4.211 5 C 0.003 3.997 6 N -0.417 5.417 7 C 0.013 3.987 8 C -0.525 4.525 9 H 0.090 0.910 10 C -0.183 4.183 11 N -0.470 5.470 12 Si 0.798 3.202 13 H -0.182 1.182 14 H -0.196 1.196 15 H -0.197 1.197 16 C -0.177 4.177 17 C -0.136 4.136 18 C -0.149 4.149 19 H 0.090 0.910 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.128 0.872 25 H 0.220 0.780 26 H 0.221 0.779 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.797 -4.273 -2.331 6.173 hybrid contribution 0.545 1.220 -0.065 1.338 sum -3.252 -3.053 -2.396 5.063 Atomic orbital electron populations 1.21708 0.94825 1.01616 1.01301 1.20279 0.96130 0.92070 1.01559 1.19272 1.07054 0.97046 0.91717 1.20195 1.09530 0.93930 0.97486 1.18179 1.01614 0.92487 0.87375 1.41772 1.77958 1.17310 1.04676 1.17596 0.96090 0.94353 0.90706 1.19393 1.35386 0.97452 1.00308 0.91033 1.26575 0.93039 1.03903 0.94794 1.69935 1.30354 1.37864 1.08821 0.85259 0.78332 0.77588 0.79042 1.18243 1.19645 1.19660 1.20737 1.03910 0.95274 0.97804 1.19327 1.04196 0.94910 0.95174 1.20615 1.00728 0.99455 0.94081 0.90960 0.93411 0.93685 0.91687 0.91854 0.87158 0.77998 0.77930 0.91074 0.88598 0.92784 0.93640 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.69 71.98 0.70 -3.18 16 2 C -0.06 -2.07 5.35 29.85 0.16 -1.91 16 3 C -0.15 -6.42 5.15 -19.73 -0.10 -6.52 16 4 C -0.19 -8.33 9.50 22.38 0.21 -8.12 16 5 C 0.11 5.15 6.79 38.98 0.26 5.42 16 6 N -0.87 -35.29 8.98 -50.39 -0.45 -35.74 16 7 C 0.02 0.94 5.59 -21.17 -0.12 0.83 16 8 C -0.49 -26.98 8.51 23.37 0.20 -26.78 16 9 H 0.07 3.70 6.69 -2.91 -0.02 3.69 16 10 C 0.03 1.49 5.18 85.25 0.44 1.93 16 11 N -0.84 -46.25 10.87 21.83 0.24 -46.01 16 12 Si 0.98 40.08 29.59 68.60 2.03 42.11 16 13 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 14 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 15 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 16 C -0.16 -8.54 8.25 22.46 0.19 -8.36 16 17 C -0.13 -6.34 5.84 -20.12 -0.12 -6.46 16 18 C -0.09 -3.55 9.18 71.24 0.65 -2.89 16 19 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 20 H 0.05 1.40 6.89 -2.39 -0.02 1.38 16 21 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.06 2.02 6.95 -2.39 -0.02 2.00 16 23 H 0.06 1.91 8.04 -2.39 -0.02 1.89 16 24 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 25 H 0.39 15.69 7.06 -92.71 -0.65 15.04 16 26 H 0.39 12.94 8.84 -92.71 -0.82 12.12 16 27 H 0.28 14.04 8.30 -92.71 -0.77 13.27 16 28 H 0.10 5.57 6.13 -2.91 -0.02 5.56 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.73 8.07 -2.39 -0.02 1.71 16 31 H 0.08 2.48 5.36 -2.39 -0.01 2.47 16 Total: -1.00 -61.27 254.60 3.97 -57.31 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -0.33 Total: 38.38 kcal Atomic # 6 Polarization: -58.52 SS G_CDS: 2.48 Total: -56.04 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -0.22 Total: -81.75 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -61.27 3.97 -57.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719294.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.547 kcal (2) G-P(sol) polarization free energy of solvation -61.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds