Wall clock time and date at job start Mon Mar 30 2020 02:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34807 * 125.86517 * 125.00152 * 10 9 7 12 12 C 1.36649 * 107.58192 * 179.97438 * 11 10 9 13 13 C 1.43193 * 126.25845 * 179.97438 * 12 11 10 14 14 C 8.27352 * 108.86006 * 166.84620 * 2 1 3 15 15 C 9.69727 * 108.52630 * 164.34537 * 2 1 3 16 16 N 1.46902 * 109.47365 * 15.95551 * 15 14 13 17 17 C 1.41025 * 107.48680 * 359.97438 * 12 11 10 18 18 N 1.30633 * 108.07844 * 359.74109 * 17 12 11 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.07993 * 126.21239 * 359.95006 * 11 10 9 23 23 H 1.09002 * 109.46847 * 135.95299 * 15 14 13 24 24 H 1.09004 * 109.47116 * 255.95307 * 15 14 13 25 25 H 1.00894 * 111.00008 * 180.02562 * 16 15 14 26 26 H 1.00903 * 110.99655 * 303.95418 * 16 15 14 27 27 H 1.08003 * 125.95782 * 180.02562 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.2398 -4.6202 0.8954 12 6 3.2695 -5.4470 0.5439 13 6 3.6655 -6.6430 1.2245 14 6 3.9896 -7.6239 1.7817 15 6 4.3963 -8.8537 2.4811 16 7 3.3242 -9.8527 2.3788 17 6 3.8710 -4.9070 -0.6117 18 7 3.2261 -3.8172 -0.9328 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 1.5764 -4.7502 1.7375 23 1 5.3046 -9.2475 2.0250 24 1 4.5848 -8.6292 3.5310 25 1 3.5792 -10.7066 2.8518 26 1 2.4543 -9.4874 2.7366 27 1 4.7144 -5.3244 -1.1417 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585142861.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:28 Heat of formation + Delta-G solvation = 115.930394 kcal Electronic energy + Delta-G solvation = -11823.381370 eV Core-core repulsion = 9583.915567 eV Total energy + Delta-G solvation = -2239.465803 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.46220 -35.52110 -33.88186 -32.52570 -31.40256 -29.25363 -27.24322 -25.12339 -23.34472 -20.99014 -20.10990 -17.56407 -16.59147 -16.31763 -15.02488 -14.93469 -14.54879 -14.25228 -13.90672 -13.35004 -12.75450 -12.52551 -12.32514 -11.82128 -11.13283 -10.90240 -10.66888 -10.45950 -10.25557 -9.82656 -9.51721 -8.90345 -8.77999 -8.60405 -7.53963 -6.30337 -4.36052 2.18802 2.87001 2.97536 3.23181 3.26575 3.29847 3.43551 3.93597 4.27457 4.49050 4.76005 5.05216 5.33129 5.36331 5.39769 5.58952 6.01896 6.19998 6.40838 6.76989 6.87706 6.94600 7.19913 7.25957 7.60829 7.78094 7.85121 7.98607 8.43674 8.71625 9.30027 10.78649 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.069885 B = 0.005462 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.560832 B = 5125.320815 C = 5221.801595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.910 3.090 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.070 0.930 9 C 0.253 3.747 10 N -0.319 5.319 11 C 0.084 3.916 12 C -0.183 4.183 13 C -0.046 4.046 14 C -0.233 4.233 15 C 0.190 3.810 16 N -0.849 5.849 17 C 0.048 3.952 18 N -0.278 5.278 19 H 0.269 0.731 20 H 0.057 0.943 21 H 0.050 0.950 22 H 0.172 0.828 23 H 0.090 0.910 24 H 0.045 0.955 25 H 0.344 0.656 26 H 0.345 0.655 27 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.868 -12.406 5.185 14.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.737 3.263 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.571 4.571 8 H 0.088 0.912 9 C 0.136 3.864 10 N -0.096 5.096 11 C -0.069 4.069 12 C -0.196 4.196 13 C -0.049 4.049 14 C -0.235 4.235 15 C 0.061 3.939 16 N -0.380 5.380 17 C -0.138 4.138 18 N -0.099 5.099 19 H 0.078 0.922 20 H 0.075 0.925 21 H 0.067 0.933 22 H 0.189 0.811 23 H 0.108 0.892 24 H 0.063 0.937 25 H 0.157 0.843 26 H 0.158 0.842 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.616 -11.077 3.537 12.511 hybrid contribution 0.367 0.305 1.657 1.724 sum 4.983 -10.773 5.194 12.956 Atomic orbital electron populations 1.69906 1.06068 1.27894 1.49337 1.24947 0.95019 0.99627 0.94404 0.86348 0.79368 0.81568 0.79016 1.19817 1.20974 1.19990 1.21183 0.94004 0.89220 1.52686 0.91227 1.19847 0.85732 0.81201 0.99595 1.49477 1.23655 1.18884 1.17592 1.22586 0.98783 0.89388 0.96094 1.15734 1.04145 0.97471 1.02220 1.18330 0.97075 0.92418 0.97053 1.21583 1.03859 0.96515 1.01520 1.18412 0.94272 0.85188 0.96039 1.58656 1.06013 1.07215 1.66077 1.23860 1.00312 0.93797 0.95784 1.77329 1.01214 1.17333 1.14072 0.92158 0.92489 0.93261 0.81100 0.89241 0.93684 0.84325 0.84219 0.80589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 13.29 55.43 0.74 -24.29 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 15 3 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 15 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 7 C -0.53 -14.65 9.24 -34.44 -0.32 -14.97 15 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 15 9 C 0.25 6.33 6.25 -5.19 -0.03 6.29 15 10 N -0.32 -7.26 3.66 -62.23 -0.23 -7.48 15 11 C 0.08 1.64 11.38 -16.82 -0.19 1.45 15 12 C -0.18 -3.47 5.90 -107.49 -0.63 -4.11 15 13 C -0.05 -0.80 13.71 -38.84 -0.53 -1.33 15 14 C -0.23 -3.52 13.60 -37.12 -0.50 -4.03 15 15 C 0.19 2.02 7.26 -6.61 -0.05 1.97 15 16 N -0.85 -8.19 9.60 -12.89 -0.12 -8.32 15 17 C 0.05 0.93 11.98 -17.01 -0.20 0.73 15 18 N -0.28 -6.33 12.36 30.84 0.38 -5.95 15 19 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 20 H 0.06 1.39 8.07 -51.93 -0.42 0.97 15 21 H 0.05 1.30 8.14 -51.93 -0.42 0.87 15 22 H 0.17 2.74 8.06 -52.49 -0.42 2.32 15 23 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 15 25 H 0.34 2.27 9.08 -39.29 -0.36 1.91 15 26 H 0.35 3.19 8.97 -39.29 -0.35 2.84 15 27 H 0.18 2.74 8.06 -52.48 -0.42 2.31 15 LS Contribution 257.33 15.07 3.88 3.88 Total: -1.00 -30.61 257.33 -5.73 -36.33 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -2.79 Total: 2.04 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -2.56 Total: -12.37 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.77 Total: -46.04 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.61 -5.73 -36.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585142861.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.264 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds