Wall clock time and date at job start Mon Mar 30 2020 02:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34807 * 125.86517 * 125.00152 * 10 9 7 12 12 C 1.36649 * 107.58192 * 179.97438 * 11 10 9 13 13 C 1.43193 * 126.25845 * 179.97438 * 12 11 10 14 14 C 8.27352 * 108.86006 * 166.84620 * 2 1 3 15 15 C 9.69727 * 108.52630 * 164.34537 * 2 1 3 16 16 N 1.46902 * 109.47365 * 15.95551 * 15 14 13 17 17 C 1.41025 * 107.48680 * 359.97438 * 12 11 10 18 18 N 1.30633 * 108.07844 * 359.74109 * 17 12 11 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.07993 * 126.21239 * 359.95006 * 11 10 9 23 23 H 1.09002 * 109.46847 * 135.95299 * 15 14 13 24 24 H 1.09004 * 109.47116 * 255.95307 * 15 14 13 25 25 H 1.00894 * 111.00008 * 180.02562 * 16 15 14 26 26 H 1.00903 * 110.99655 * 303.95418 * 16 15 14 27 27 H 1.08003 * 125.95782 * 180.02562 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.2398 -4.6202 0.8954 12 6 3.2695 -5.4470 0.5439 13 6 3.6655 -6.6430 1.2245 14 6 3.9896 -7.6239 1.7817 15 6 4.3963 -8.8537 2.4811 16 7 3.3242 -9.8527 2.3788 17 6 3.8710 -4.9070 -0.6117 18 7 3.2261 -3.8172 -0.9328 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 1.5764 -4.7502 1.7375 23 1 5.3046 -9.2475 2.0250 24 1 4.5848 -8.6292 3.5310 25 1 3.5792 -10.7066 2.8518 26 1 2.4543 -9.4874 2.7366 27 1 4.7144 -5.3244 -1.1417 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585142861.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:28 Heat of formation + Delta-G solvation = 94.562661 kcal Electronic energy + Delta-G solvation = -11824.307945 eV Core-core repulsion = 9583.915567 eV Total energy + Delta-G solvation = -2240.392378 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.04155 -36.49148 -35.75225 -34.00086 -33.02648 -30.73135 -29.02379 -26.20351 -25.20043 -22.44285 -21.76608 -19.04373 -18.53548 -17.48738 -16.56926 -16.14965 -16.01410 -15.66706 -15.09788 -14.89421 -14.27708 -14.03811 -13.78799 -13.49693 -13.00245 -12.74264 -12.32686 -12.12197 -11.88165 -11.68183 -10.86894 -10.74771 -10.38675 -9.66525 -9.03240 -8.36955 -6.51276 0.75923 1.34911 1.38127 1.40195 1.48455 1.72844 1.77467 2.33348 2.64982 2.95504 3.32343 3.93229 3.95917 4.02275 4.43087 4.57319 4.69204 4.85468 4.88290 4.99787 5.04056 5.52376 5.67295 5.79791 6.11865 6.16655 6.57628 6.62576 6.75006 6.86493 7.18836 8.71092 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.069885 B = 0.005462 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.560832 B = 5125.320815 C = 5221.801595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.552 4.552 8 H 0.054 0.946 9 C 0.267 3.733 10 N -0.344 5.344 11 C 0.079 3.921 12 C -0.176 4.176 13 C -0.104 4.104 14 C -0.193 4.193 15 C 0.184 3.816 16 N -0.859 5.859 17 C 0.055 3.945 18 N -0.325 5.325 19 H 0.274 0.726 20 H 0.059 0.941 21 H 0.025 0.975 22 H 0.199 0.801 23 H 0.108 0.892 24 H 0.071 0.929 25 H 0.362 0.638 26 H 0.347 0.653 27 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.999 -13.623 6.281 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.590 4.590 8 H 0.072 0.928 9 C 0.149 3.851 10 N -0.122 5.122 11 C -0.072 4.072 12 C -0.189 4.189 13 C -0.107 4.107 14 C -0.194 4.194 15 C 0.055 3.945 16 N -0.392 5.392 17 C -0.131 4.131 18 N -0.145 5.145 19 H 0.083 0.917 20 H 0.077 0.923 21 H 0.043 0.957 22 H 0.216 0.784 23 H 0.126 0.874 24 H 0.089 0.911 25 H 0.178 0.822 26 H 0.160 0.840 27 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 5.752 -12.335 4.651 14.383 hybrid contribution 0.080 0.461 1.373 1.451 sum 5.832 -11.874 6.024 14.536 Atomic orbital electron populations 1.69983 1.07227 1.28970 1.49586 1.25756 0.95887 1.02805 0.93729 0.85379 0.78282 0.77690 0.78970 1.19880 1.19686 1.19340 1.21356 0.93457 0.90864 1.53342 0.92796 1.19417 0.85825 0.81476 0.98391 1.49189 1.24297 1.19576 1.19131 1.23110 0.99442 0.88480 0.96169 1.15882 1.03378 0.97783 1.01817 1.18295 0.99663 0.93334 0.99386 1.22595 1.01171 0.96295 0.99380 1.18730 0.95028 0.83706 0.97043 1.58603 1.05910 1.07804 1.66875 1.24457 1.00278 0.92575 0.95782 1.77249 1.02388 1.19434 1.15476 0.91723 0.92316 0.95676 0.78432 0.87393 0.91121 0.82189 0.84010 0.77335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.95 13.29 21.45 0.28 -51.67 15 2 C 0.02 1.05 5.46 84.66 0.46 1.51 15 3 Si 0.97 43.49 29.54 68.60 2.03 45.51 15 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 7 C -0.55 -31.14 9.24 25.60 0.24 -30.90 15 8 H 0.05 3.15 7.81 -2.91 -0.02 3.12 15 9 C 0.27 13.84 6.25 85.63 0.54 14.37 15 10 N -0.34 -16.06 3.66 -350.80 -1.28 -17.34 15 11 C 0.08 3.07 11.38 83.86 0.95 4.02 15 12 C -0.18 -6.59 5.90 -21.72 -0.13 -6.72 15 13 C -0.10 -3.45 13.71 30.02 0.41 -3.04 15 14 C -0.19 -5.29 13.60 31.13 0.42 -4.87 15 15 C 0.18 3.21 7.26 84.50 0.61 3.82 15 16 N -0.86 -13.71 9.60 -194.71 -1.87 -15.58 15 17 C 0.05 2.10 11.98 85.55 1.03 3.12 15 18 N -0.32 -15.06 12.36 -56.36 -0.70 -15.76 15 19 H 0.27 14.48 8.31 -92.71 -0.77 13.71 15 20 H 0.06 2.95 8.07 -2.39 -0.02 2.94 15 21 H 0.03 1.40 8.14 -2.39 -0.02 1.38 15 22 H 0.20 6.26 8.06 -2.91 -0.02 6.24 15 23 H 0.11 1.56 8.14 -2.39 -0.02 1.54 15 24 H 0.07 0.95 8.14 -2.38 -0.02 0.93 15 25 H 0.36 3.51 9.08 -89.70 -0.81 2.70 15 26 H 0.35 5.41 8.97 -89.69 -0.80 4.60 15 27 H 0.21 6.21 8.06 -2.91 -0.02 6.19 15 Total: -1.00 -66.01 257.33 2.58 -63.43 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -0.42 Total: 10.08 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 4.53 Total: -18.68 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -3.56 Total: -100.34 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -66.01 2.58 -63.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585142861.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.992 kcal (2) G-P(sol) polarization free energy of solvation -66.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds