Wall clock time and date at job start Mon Mar 30 2020 02:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 115.56089 * 2 1 4 4 N 1.46899 * 109.47352 * 34.30591 * 3 2 1 5 5 C 1.46898 * 111.00140 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47341 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00231 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99851 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00062 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46673 * 90.00432 * 10 8 6 12 12 H 1.48493 * 109.47353 * 210.00013 * 10 8 6 13 13 H 1.48495 * 109.47245 * 330.00541 * 10 8 6 14 14 C 1.53000 * 117.50223 * 214.30865 * 2 1 3 15 15 C 1.52997 * 117.49889 * 145.68126 * 2 1 3 16 16 F 1.39902 * 117.49965 * 0.02562 * 15 2 1 17 17 F 1.39893 * 117.52091 * 214.97407 * 15 2 1 18 18 H 1.08996 * 109.47111 * 205.68891 * 1 2 3 19 19 H 1.09000 * 109.47300 * 325.69419 * 1 2 3 20 20 H 1.09004 * 109.46610 * 85.68977 * 1 2 3 21 21 H 1.08994 * 109.47047 * 154.31069 * 3 2 1 22 22 H 1.09000 * 109.46919 * 274.30794 * 3 2 1 23 23 H 1.00905 * 110.99609 * 56.04646 * 4 3 2 24 24 H 1.08999 * 109.46761 * 300.00166 * 5 4 3 25 25 H 1.09002 * 109.46852 * 59.99959 * 5 4 3 26 26 H 0.96999 * 119.99744 * 179.97438 * 9 8 6 27 27 H 1.08990 * 117.49990 * 145.01974 * 14 2 1 28 28 H 1.09004 * 117.49237 * 359.97438 * 14 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 7 1.3694 2.3157 0.7806 5 6 1.9735 3.6546 0.8021 6 6 1.1052 4.5846 1.6097 7 1 0.1957 4.2176 2.0620 8 6 1.4723 5.9036 1.7719 9 7 2.5800 6.3503 1.2215 10 14 0.3963 7.0562 2.7735 11 1 0.8232 7.0212 4.1954 12 1 0.5311 8.4392 2.2501 13 1 -1.0208 6.6242 2.6714 14 6 2.2365 -1.1210 -0.7649 15 6 2.2364 -1.1209 0.7651 16 9 1.4340 -2.0677 1.4108 17 9 3.4366 -0.8058 1.4111 18 1 -0.3633 -0.9261 0.4455 19 1 -0.3634 0.8489 0.5792 20 1 -0.3633 0.0772 -1.0248 21 1 3.1823 1.3085 0.4455 22 1 2.2773 1.7414 -1.0248 23 1 1.2200 1.9709 1.7170 24 1 2.9643 3.5988 1.2530 25 1 2.0588 4.0311 -0.2172 26 1 2.8381 7.2784 1.3353 27 1 3.1715 -0.8752 -1.2682 28 1 1.6112 -1.8587 -1.2678 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594733278.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:33 Heat of formation + Delta-G solvation = -76.735272 kcal Electronic energy + Delta-G solvation = -13332.183216 eV Core-core repulsion = 10633.673616 eV Total energy + Delta-G solvation = -2698.509600 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.53684 -47.21162 -37.74806 -34.51078 -32.23669 -28.50219 -27.22419 -24.37753 -22.53022 -21.44516 -19.45756 -17.57653 -16.61937 -16.08670 -15.78951 -14.88810 -14.42107 -13.92177 -13.84891 -13.57249 -13.47218 -13.02663 -12.50856 -12.45432 -12.03138 -11.62558 -11.47210 -11.03206 -10.78336 -10.65827 -10.35401 -9.92043 -9.52712 -9.20118 -8.49907 -7.37642 -6.04687 -4.06848 3.13052 3.20827 3.31746 3.37709 3.42139 4.25821 4.40967 4.45543 4.73535 5.13812 5.31527 5.39428 5.43154 5.69893 5.76849 5.90101 6.07653 6.14656 6.24885 6.60711 7.19111 7.38360 7.74998 8.08933 8.31418 8.54442 9.01882 9.58197 11.06534 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.056606 B = 0.006829 C = 0.006684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.524314 B = 4099.093974 C = 4188.221694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.104 4.104 3 C 0.087 3.913 4 N -0.684 5.684 5 C 0.193 3.807 6 C -0.515 4.515 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.900 3.100 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C -0.174 4.174 15 C 0.184 3.816 16 F -0.164 7.164 17 F -0.162 7.162 18 H 0.055 0.945 19 H 0.095 0.905 20 H 0.067 0.933 21 H 0.033 0.967 22 H 0.080 0.920 23 H 0.330 0.670 24 H -0.012 1.012 25 H 0.029 0.971 26 H 0.262 0.738 27 H 0.119 0.881 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.315 -13.507 -3.370 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.106 4.106 3 C -0.043 4.043 4 N -0.314 5.314 5 C 0.067 3.933 6 C -0.553 4.553 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.728 3.272 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.197 1.197 14 C -0.212 4.212 15 C 0.147 3.853 16 F -0.145 7.145 17 F -0.142 7.142 18 H 0.074 0.926 19 H 0.113 0.887 20 H 0.086 0.914 21 H 0.051 0.949 22 H 0.099 0.901 23 H 0.147 0.853 24 H 0.006 0.994 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.137 0.863 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.610 -13.195 -3.877 13.847 hybrid contribution 0.506 0.372 1.306 1.449 sum -1.104 -12.823 -2.571 13.125 Atomic orbital electron populations 1.21325 0.89514 1.03402 1.03233 1.23074 0.97884 0.92055 0.97594 1.21434 0.94112 0.88374 1.00399 1.60724 1.48661 1.03705 1.18301 1.19575 0.93042 0.83290 0.97428 1.21163 1.08091 0.94292 1.31787 0.91892 1.24987 0.95313 0.98240 0.96013 1.69962 1.23220 1.15933 1.44623 0.86467 0.80824 0.79886 0.80052 1.20721 1.21244 1.19734 1.24451 1.04431 1.01587 0.90765 1.20400 0.81365 0.95038 0.88453 1.92971 1.72343 1.65474 1.83704 1.92999 1.44955 1.92668 1.83590 0.92643 0.88675 0.91401 0.94929 0.90126 0.85343 0.99439 0.95252 0.92879 0.86287 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 9.71 37.16 0.36 -1.22 15 2 C -0.10 -1.49 2.51 -154.51 -0.39 -1.88 15 3 C 0.09 1.51 5.79 -3.82 -0.02 1.49 15 4 N -0.68 -14.36 5.01 -115.06 -0.58 -14.94 15 5 C 0.19 5.03 5.44 -4.98 -0.03 5.00 15 6 C -0.51 -14.53 9.32 -34.44 -0.32 -14.85 15 7 H 0.06 1.74 7.81 -52.49 -0.41 1.33 15 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 9 N -0.90 -26.83 13.29 55.43 0.74 -26.10 15 10 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 15 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 13 H -0.27 -6.44 7.11 56.52 0.40 -6.03 15 14 C -0.17 -1.97 9.94 -26.73 -0.27 -2.24 15 15 C 0.18 2.65 5.14 -26.73 -0.14 2.52 15 16 F -0.16 -2.42 16.50 2.25 0.04 -2.39 15 17 F -0.16 -2.63 16.50 2.25 0.04 -2.59 15 18 H 0.05 0.68 7.10 -51.93 -0.37 0.31 15 19 H 0.09 1.47 6.69 -51.93 -0.35 1.12 15 20 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.03 0.60 7.10 -51.93 -0.37 0.23 15 22 H 0.08 1.37 8.14 -51.93 -0.42 0.95 15 23 H 0.33 6.81 8.61 -39.29 -0.34 6.47 15 24 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 15 25 H 0.03 0.82 8.14 -51.93 -0.42 0.39 15 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 27 H 0.12 1.20 8.14 -51.93 -0.42 0.78 15 28 H 0.12 1.09 8.14 -51.93 -0.42 0.66 15 LS Contribution 249.93 15.07 3.77 3.77 Total: -1.00 -29.70 249.93 -5.42 -35.12 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -3.50 Total: 0.18 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -0.90 Total: -9.68 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.16 Total: -41.04 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.07 Total: -4.98 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.70 -5.42 -35.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594733278.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.616 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds