Wall clock time and date at job start Mon Mar 30 2020 02:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 115.56089 * 2 1 4 4 N 1.46899 * 109.47352 * 34.30591 * 3 2 1 5 5 C 1.46898 * 111.00140 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47341 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00231 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99851 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00062 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46673 * 90.00432 * 10 8 6 12 12 H 1.48493 * 109.47353 * 210.00013 * 10 8 6 13 13 H 1.48495 * 109.47245 * 330.00541 * 10 8 6 14 14 C 1.53000 * 117.50223 * 214.30865 * 2 1 3 15 15 C 1.52997 * 117.49889 * 145.68126 * 2 1 3 16 16 F 1.39902 * 117.49965 * 0.02562 * 15 2 1 17 17 F 1.39893 * 117.52091 * 214.97407 * 15 2 1 18 18 H 1.08996 * 109.47111 * 205.68891 * 1 2 3 19 19 H 1.09000 * 109.47300 * 325.69419 * 1 2 3 20 20 H 1.09004 * 109.46610 * 85.68977 * 1 2 3 21 21 H 1.08994 * 109.47047 * 154.31069 * 3 2 1 22 22 H 1.09000 * 109.46919 * 274.30794 * 3 2 1 23 23 H 1.00905 * 110.99609 * 56.04646 * 4 3 2 24 24 H 1.08999 * 109.46761 * 300.00166 * 5 4 3 25 25 H 1.09002 * 109.46852 * 59.99959 * 5 4 3 26 26 H 0.96999 * 119.99744 * 179.97438 * 9 8 6 27 27 H 1.08990 * 117.49990 * 145.01974 * 14 2 1 28 28 H 1.09004 * 117.49237 * 359.97438 * 14 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 7 1.3694 2.3157 0.7806 5 6 1.9735 3.6546 0.8021 6 6 1.1052 4.5846 1.6097 7 1 0.1957 4.2176 2.0620 8 6 1.4723 5.9036 1.7719 9 7 2.5800 6.3503 1.2215 10 14 0.3963 7.0562 2.7735 11 1 0.8232 7.0212 4.1954 12 1 0.5311 8.4392 2.2501 13 1 -1.0208 6.6242 2.6714 14 6 2.2365 -1.1210 -0.7649 15 6 2.2364 -1.1209 0.7651 16 9 1.4340 -2.0677 1.4108 17 9 3.4366 -0.8058 1.4111 18 1 -0.3633 -0.9261 0.4455 19 1 -0.3634 0.8489 0.5792 20 1 -0.3633 0.0772 -1.0248 21 1 3.1823 1.3085 0.4455 22 1 2.2773 1.7414 -1.0248 23 1 1.2200 1.9709 1.7170 24 1 2.9643 3.5988 1.2530 25 1 2.0588 4.0311 -0.2172 26 1 2.8381 7.2784 1.3353 27 1 3.1715 -0.8752 -1.2682 28 1 1.6112 -1.8587 -1.2678 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594733278.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:33 Heat of formation + Delta-G solvation = -95.805464 kcal Electronic energy + Delta-G solvation = -13333.010162 eV Core-core repulsion = 10633.673616 eV Total energy + Delta-G solvation = -2699.336546 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.68344 -48.37281 -38.99290 -36.27680 -34.26545 -29.89051 -28.83418 -26.13502 -23.65554 -23.34261 -20.66369 -18.85650 -18.43898 -17.43617 -16.96466 -16.78376 -16.16998 -15.38843 -15.07980 -14.94313 -14.67271 -14.29731 -14.12897 -13.80578 -13.41904 -13.24119 -13.05433 -12.67955 -12.64762 -12.21182 -12.01801 -11.55123 -11.18958 -10.68851 -10.61603 -9.18659 -8.23127 -6.34267 1.42119 1.43493 1.55424 2.06426 2.13569 2.40137 3.10490 3.11852 3.35439 3.64388 3.81239 3.96534 4.45014 4.58147 4.59301 4.80242 4.86666 4.99863 5.03815 5.07784 5.23707 5.50533 5.60186 5.99698 6.37550 6.64195 6.85409 7.36711 8.88684 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.056606 B = 0.006829 C = 0.006684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.524314 B = 4099.093974 C = 4188.221694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.117 4.117 3 C 0.087 3.913 4 N -0.677 5.677 5 C 0.207 3.793 6 C -0.536 4.536 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.974 3.026 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.263 1.263 14 C -0.133 4.133 15 C 0.162 3.838 16 F -0.168 7.168 17 F -0.178 7.178 18 H 0.068 0.932 19 H 0.070 0.930 20 H 0.084 0.916 21 H 0.022 0.978 22 H 0.084 0.916 23 H 0.332 0.668 24 H -0.042 1.042 25 H 0.006 0.994 26 H 0.265 0.735 27 H 0.135 0.865 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -14.334 -3.729 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.118 4.118 3 C -0.042 4.042 4 N -0.306 5.306 5 C 0.079 3.921 6 C -0.574 4.574 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.798 3.202 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.187 1.187 14 C -0.171 4.171 15 C 0.125 3.875 16 F -0.148 7.148 17 F -0.159 7.159 18 H 0.087 0.913 19 H 0.089 0.911 20 H 0.102 0.898 21 H 0.040 0.960 22 H 0.102 0.898 23 H 0.149 0.851 24 H -0.024 1.024 25 H 0.024 0.976 26 H 0.074 0.926 27 H 0.153 0.847 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.645 -14.051 -4.239 14.913 hybrid contribution 0.857 0.583 1.396 1.739 sum -1.788 -13.468 -2.843 13.880 Atomic orbital electron populations 1.21279 0.88776 1.02967 1.03960 1.22946 0.98355 0.90631 0.99914 1.21444 0.93471 0.89666 0.99646 1.60609 1.48797 1.02493 1.18733 1.19231 0.91669 0.85825 0.95364 1.21536 1.08472 0.95180 1.32241 0.91610 1.25949 0.96647 1.00041 0.97028 1.70088 1.24948 1.16550 1.45879 0.85314 0.79109 0.77395 0.78372 1.19901 1.20680 1.18701 1.24627 1.04788 0.99360 0.88304 1.20773 0.80950 0.95394 0.90334 1.92959 1.72407 1.65406 1.84051 1.92962 1.45881 1.92882 1.84176 0.91332 0.91134 0.89772 0.95997 0.89783 0.85133 1.02391 0.97551 0.92589 0.84660 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.81 9.71 71.98 0.70 -2.11 15 2 C -0.12 -3.13 2.51 -52.18 -0.13 -3.26 15 3 C 0.09 3.03 5.79 86.31 0.50 3.53 15 4 N -0.68 -28.82 5.01 -517.93 -2.59 -31.41 15 5 C 0.21 11.10 5.44 85.56 0.47 11.57 15 6 C -0.54 -30.63 9.32 25.60 0.24 -30.40 15 7 H 0.07 3.64 7.81 -2.91 -0.02 3.61 15 8 C 0.00 0.09 5.46 84.65 0.46 0.55 15 9 N -0.93 -56.62 13.29 21.44 0.28 -56.33 15 10 Si 0.97 44.30 29.54 68.60 2.03 46.33 15 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 13 H -0.26 -11.46 7.11 99.48 0.71 -10.75 15 14 C -0.13 -2.55 9.94 30.60 0.30 -2.25 15 15 C 0.16 4.39 5.14 30.60 0.16 4.54 15 16 F -0.17 -4.65 16.50 44.97 0.74 -3.90 15 17 F -0.18 -5.71 16.50 44.97 0.74 -4.97 15 18 H 0.07 1.52 7.10 -2.39 -0.02 1.51 15 19 H 0.07 2.11 6.69 -2.39 -0.02 2.10 15 20 H 0.08 1.80 8.14 -2.38 -0.02 1.78 15 21 H 0.02 0.81 7.10 -2.39 -0.02 0.79 15 22 H 0.08 2.83 8.14 -2.39 -0.02 2.81 15 23 H 0.33 13.92 8.61 -89.69 -0.77 13.15 15 24 H -0.04 -2.43 8.14 -2.39 -0.02 -2.45 15 25 H 0.01 0.37 8.14 -2.39 -0.02 0.35 15 26 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 27 H 0.14 2.21 8.14 -2.39 -0.02 2.19 15 28 H 0.15 1.99 8.14 -2.38 -0.02 1.97 15 Total: -1.00 -64.16 249.93 4.28 -59.87 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.39 Total: 8.24 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 2.70 Total: -17.82 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -2.31 Total: -87.74 kcal Atomic # 9 Polarization: -10.36 SS G_CDS: 1.48 Total: -8.87 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -64.16 4.28 -59.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594733278.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.932 kcal (2) G-P(sol) polarization free energy of solvation -64.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds