Wall clock time and date at job start Mon Mar 30 2020 02:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52989 * 115.56568 * 2 1 4 4 N 1.46905 * 109.47297 * 34.31226 * 3 2 1 5 5 C 1.46896 * 111.00128 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47261 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99379 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00614 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99436 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00384 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46863 * 90.00083 * 10 8 6 12 12 H 1.48497 * 109.47316 * 209.99835 * 10 8 6 13 13 H 1.48496 * 109.47293 * 330.00198 * 10 8 6 14 14 C 1.53000 * 117.49463 * 145.69144 * 2 1 3 15 15 C 1.52997 * 60.00347 * 107.48750 * 14 2 1 16 16 F 1.39902 * 117.49965 * 252.51289 * 15 14 2 17 17 F 1.39899 * 117.50367 * 107.48538 * 15 14 2 18 18 H 1.09000 * 109.47691 * 205.68877 * 1 2 3 19 19 H 1.09000 * 109.46743 * 325.69107 * 1 2 3 20 20 H 1.08997 * 109.47164 * 85.68480 * 1 2 3 21 21 H 1.09003 * 109.47662 * 154.31268 * 3 2 1 22 22 H 1.09002 * 109.47378 * 274.30968 * 3 2 1 23 23 H 1.00893 * 110.99737 * 56.04262 * 4 3 2 24 24 H 1.09002 * 109.47077 * 299.99869 * 5 4 3 25 25 H 1.08998 * 109.47781 * 59.99873 * 5 4 3 26 26 H 0.96995 * 119.99834 * 180.02562 * 9 8 6 27 27 H 1.09002 * 117.49696 * 214.97963 * 14 2 1 28 28 H 1.09002 * 117.50343 * 359.97438 * 14 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3801 0.0000 4 7 1.3695 2.3156 0.7807 5 6 1.9737 3.6543 0.8023 6 6 1.1055 4.5844 1.6100 7 1 0.1956 4.2176 2.0617 8 6 1.4727 5.9034 1.7723 9 7 2.5809 6.3498 1.2226 10 14 0.3961 7.0563 2.7728 11 1 0.8218 7.0215 4.1951 12 1 0.5317 8.4393 2.2493 13 1 -1.0210 6.6246 2.6697 14 6 2.2363 -1.1211 0.7650 15 6 2.2364 -1.1211 -0.7650 16 9 1.4338 -2.0676 -1.4110 17 9 3.4365 -0.8056 -1.4110 18 1 -0.3634 -0.9261 0.4455 19 1 -0.3633 0.8489 0.5793 20 1 -0.3633 0.0773 -1.0247 21 1 3.1825 1.3083 0.4454 22 1 2.2774 1.7412 -1.0248 23 1 1.2201 1.9708 1.7171 24 1 2.9646 3.5986 1.2531 25 1 2.0590 4.0311 -0.2169 26 1 2.8394 7.2776 1.3371 27 1 3.1714 -0.8753 1.2683 28 1 1.6111 -1.8583 1.2686 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594733279.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:35 Heat of formation + Delta-G solvation = -76.847805 kcal Electronic energy + Delta-G solvation = -13249.284649 eV Core-core repulsion = 10550.770169 eV Total energy + Delta-G solvation = -2698.514480 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.54020 -47.21675 -37.80304 -34.50775 -32.24546 -28.50750 -27.24571 -24.44509 -22.52978 -21.48093 -19.42459 -17.59492 -16.62302 -16.06240 -15.75430 -14.85877 -14.52867 -13.97097 -13.90280 -13.50172 -13.35227 -13.15248 -12.64692 -12.53470 -12.05337 -11.58323 -11.47132 -11.07272 -10.78394 -10.68175 -10.24774 -9.97222 -9.59343 -9.19564 -8.51763 -7.40539 -6.06362 -4.08847 3.12265 3.18766 3.30012 3.36416 3.40672 4.27666 4.36682 4.43758 4.71293 5.10960 5.29781 5.39692 5.47365 5.67584 5.76933 5.90100 6.05468 6.13990 6.25606 6.57659 7.17725 7.35432 7.72752 8.07107 8.30075 8.52208 8.99915 9.56281 11.04806 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.069388 B = 0.006430 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.429012 B = 4353.837390 C = 4588.615406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.105 4.105 3 C 0.091 3.909 4 N -0.682 5.682 5 C 0.193 3.807 6 C -0.515 4.515 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.900 3.100 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C -0.176 4.176 15 C 0.187 3.813 16 F -0.164 7.164 17 F -0.163 7.163 18 H 0.052 0.948 19 H 0.098 0.902 20 H 0.063 0.937 21 H 0.030 0.970 22 H 0.076 0.924 23 H 0.331 0.669 24 H -0.012 1.012 25 H 0.029 0.971 26 H 0.262 0.738 27 H 0.118 0.882 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.354 -13.458 -1.040 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.106 4.106 3 C -0.039 4.039 4 N -0.313 5.313 5 C 0.067 3.933 6 C -0.554 4.554 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.728 3.272 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.197 1.197 14 C -0.214 4.214 15 C 0.150 3.850 16 F -0.145 7.145 17 F -0.143 7.143 18 H 0.071 0.929 19 H 0.117 0.883 20 H 0.082 0.918 21 H 0.048 0.952 22 H 0.095 0.905 23 H 0.147 0.853 24 H 0.006 0.994 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.137 0.863 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.649 -13.145 -1.641 13.349 hybrid contribution 0.509 0.372 0.825 1.038 sum -1.140 -12.773 -0.816 12.850 Atomic orbital electron populations 1.21313 0.89415 1.03120 1.03246 1.23065 0.97860 0.92085 0.97604 1.21388 0.93618 0.88473 1.00394 1.60687 1.48729 1.03624 1.18224 1.19583 0.93010 0.83251 0.97506 1.21155 1.08077 0.94302 1.31840 0.91870 1.24994 0.95315 0.98244 0.96017 1.69964 1.23182 1.15982 1.44547 0.86465 0.80821 0.79932 0.79991 1.20734 1.21239 1.19731 1.24599 1.04451 1.01654 0.90665 1.20311 0.81235 0.94949 0.88519 1.92981 1.72392 1.65459 1.83668 1.93002 1.44991 1.92743 1.83590 0.92876 0.88322 0.91790 0.95231 0.90526 0.85287 0.99429 0.95244 0.92852 0.86336 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.38 37.16 0.35 -1.18 15 2 C -0.10 -1.49 2.51 -154.51 -0.39 -1.88 15 3 C 0.09 1.60 5.46 -3.83 -0.02 1.58 15 4 N -0.68 -13.92 5.01 -115.06 -0.58 -14.49 15 5 C 0.19 4.95 5.44 -4.98 -0.03 4.93 15 6 C -0.52 -14.31 9.32 -34.44 -0.32 -14.63 15 7 H 0.06 1.71 7.81 -52.48 -0.41 1.30 15 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 15 9 N -0.90 -26.63 13.29 55.43 0.74 -25.89 15 10 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 15 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 14 C -0.18 -2.07 9.79 -26.73 -0.26 -2.33 15 15 C 0.19 2.64 5.14 -26.73 -0.14 2.50 15 16 F -0.16 -2.36 17.14 2.25 0.04 -2.32 15 17 F -0.16 -2.52 17.14 2.25 0.04 -2.49 15 18 H 0.05 0.60 7.90 -51.93 -0.41 0.19 15 19 H 0.10 1.46 6.69 -51.93 -0.35 1.11 15 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.03 0.52 7.90 -51.93 -0.41 0.11 15 22 H 0.08 1.42 8.14 -51.93 -0.42 0.99 15 23 H 0.33 6.33 8.61 -39.30 -0.34 5.99 15 24 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 15 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 27 H 0.12 1.30 8.05 -51.93 -0.42 0.88 15 28 H 0.12 1.14 8.05 -51.93 -0.42 0.73 15 LS Contribution 251.82 15.07 3.79 3.79 Total: -1.00 -29.22 251.82 -5.47 -34.69 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -3.58 Total: -0.13 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.90 Total: -9.54 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.16 Total: -40.39 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.08 Total: -4.81 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.22 -5.47 -34.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594733279.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.157 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds