Wall clock time and date at job start Mon Mar 30 2020 02:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52989 * 115.56568 * 2 1 4 4 N 1.46905 * 109.47297 * 34.31226 * 3 2 1 5 5 C 1.46896 * 111.00128 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47261 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99379 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00614 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99436 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00384 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46863 * 90.00083 * 10 8 6 12 12 H 1.48497 * 109.47316 * 209.99835 * 10 8 6 13 13 H 1.48496 * 109.47293 * 330.00198 * 10 8 6 14 14 C 1.53000 * 117.49463 * 145.69144 * 2 1 3 15 15 C 1.52997 * 60.00347 * 107.48750 * 14 2 1 16 16 F 1.39902 * 117.49965 * 252.51289 * 15 14 2 17 17 F 1.39899 * 117.50367 * 107.48538 * 15 14 2 18 18 H 1.09000 * 109.47691 * 205.68877 * 1 2 3 19 19 H 1.09000 * 109.46743 * 325.69107 * 1 2 3 20 20 H 1.08997 * 109.47164 * 85.68480 * 1 2 3 21 21 H 1.09003 * 109.47662 * 154.31268 * 3 2 1 22 22 H 1.09002 * 109.47378 * 274.30968 * 3 2 1 23 23 H 1.00893 * 110.99737 * 56.04262 * 4 3 2 24 24 H 1.09002 * 109.47077 * 299.99869 * 5 4 3 25 25 H 1.08998 * 109.47781 * 59.99873 * 5 4 3 26 26 H 0.96995 * 119.99834 * 180.02562 * 9 8 6 27 27 H 1.09002 * 117.49696 * 214.97963 * 14 2 1 28 28 H 1.09002 * 117.50343 * 359.97438 * 14 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3801 0.0000 4 7 1.3695 2.3156 0.7807 5 6 1.9737 3.6543 0.8023 6 6 1.1055 4.5844 1.6100 7 1 0.1956 4.2176 2.0617 8 6 1.4727 5.9034 1.7723 9 7 2.5809 6.3498 1.2226 10 14 0.3961 7.0563 2.7728 11 1 0.8218 7.0215 4.1951 12 1 0.5317 8.4393 2.2493 13 1 -1.0210 6.6246 2.6697 14 6 2.2363 -1.1211 0.7650 15 6 2.2364 -1.1211 -0.7650 16 9 1.4338 -2.0676 -1.4110 17 9 3.4365 -0.8056 -1.4110 18 1 -0.3634 -0.9261 0.4455 19 1 -0.3633 0.8489 0.5793 20 1 -0.3633 0.0773 -1.0247 21 1 3.1825 1.3083 0.4454 22 1 2.2774 1.7412 -1.0248 23 1 1.2201 1.9708 1.7171 24 1 2.9646 3.5986 1.2531 25 1 2.0590 4.0311 -0.2169 26 1 2.8394 7.2776 1.3371 27 1 3.1714 -0.8753 1.2683 28 1 1.6111 -1.8583 1.2686 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594733279.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:35 Heat of formation + Delta-G solvation = -95.335016 kcal Electronic energy + Delta-G solvation = -13250.086314 eV Core-core repulsion = 10550.770169 eV Total energy + Delta-G solvation = -2699.316145 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.66875 -48.35562 -39.05300 -36.25526 -34.24642 -29.88376 -28.85044 -26.16959 -23.72340 -23.30872 -20.63798 -18.86903 -18.40908 -17.43195 -16.99574 -16.55518 -16.30254 -15.26451 -15.06575 -14.97089 -14.62838 -14.37260 -14.25956 -13.93605 -13.54857 -13.23147 -12.87305 -12.66095 -12.63534 -12.26255 -12.02820 -11.39304 -11.28545 -10.65870 -10.65513 -9.17111 -8.21785 -6.33041 1.43524 1.45211 1.56906 2.02681 2.11623 2.41703 3.12298 3.13929 3.29728 3.61306 3.83796 3.94132 4.44209 4.54138 4.60679 4.77172 4.85650 4.96322 5.03805 5.09341 5.23873 5.48502 5.61570 6.00590 6.39632 6.69452 6.89067 7.38193 8.90091 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.069388 B = 0.006430 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.429012 B = 4353.837390 C = 4588.615406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.118 4.118 3 C 0.093 3.907 4 N -0.674 5.674 5 C 0.206 3.794 6 C -0.533 4.533 7 H 0.069 0.931 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.975 3.025 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.262 1.262 14 C -0.143 4.143 15 C 0.175 3.825 16 F -0.166 7.166 17 F -0.176 7.176 18 H 0.080 0.920 19 H 0.083 0.917 20 H 0.057 0.943 21 H 0.030 0.970 22 H 0.058 0.942 23 H 0.341 0.659 24 H -0.037 1.037 25 H -0.002 1.002 26 H 0.265 0.735 27 H 0.129 0.871 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 -14.455 0.264 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.119 4.119 3 C -0.036 4.036 4 N -0.305 5.305 5 C 0.078 3.922 6 C -0.571 4.571 7 H 0.088 0.912 8 C -0.198 4.198 9 N -0.577 5.577 10 Si 0.799 3.201 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.187 1.187 14 C -0.180 4.180 15 C 0.138 3.862 16 F -0.146 7.146 17 F -0.156 7.156 18 H 0.098 0.902 19 H 0.102 0.898 20 H 0.076 0.924 21 H 0.048 0.952 22 H 0.076 0.924 23 H 0.159 0.841 24 H -0.019 1.019 25 H 0.016 0.984 26 H 0.073 0.927 27 H 0.148 0.852 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.730 -14.174 -0.336 14.439 hybrid contribution 0.873 0.637 0.364 1.140 sum -1.857 -13.538 0.028 13.665 Atomic orbital electron populations 1.21280 0.88635 1.03870 1.02892 1.22909 0.98371 0.90631 1.00013 1.21318 0.93712 0.89863 0.98743 1.60510 1.48658 1.02156 1.19170 1.19232 0.91980 0.85904 0.95056 1.21534 1.08466 0.95069 1.32044 0.91235 1.25971 0.96638 1.00119 0.97084 1.70099 1.25042 1.16550 1.45963 0.85300 0.79111 0.77256 0.78433 1.19654 1.21051 1.18660 1.24759 1.04692 0.99828 0.88747 1.20527 0.80769 0.94881 0.90028 1.92978 1.72418 1.65289 1.83928 1.92977 1.45686 1.92908 1.84058 0.90155 0.89812 0.92415 0.95189 0.92393 0.84078 1.01888 0.98397 0.92655 0.85244 0.83119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 9.38 71.98 0.67 -2.06 15 2 C -0.12 -3.16 2.51 -52.18 -0.13 -3.30 15 3 C 0.09 3.27 5.46 86.30 0.47 3.74 15 4 N -0.67 -27.57 5.01 -517.94 -2.59 -30.17 15 5 C 0.21 10.87 5.44 85.56 0.47 11.34 15 6 C -0.53 -29.73 9.32 25.60 0.24 -29.49 15 7 H 0.07 3.71 7.81 -2.91 -0.02 3.69 15 8 C 0.00 0.00 5.46 84.65 0.46 0.46 15 9 N -0.94 -56.38 13.29 21.45 0.28 -56.10 15 10 Si 0.97 43.57 29.54 68.60 2.03 45.60 15 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 13 H -0.26 -11.22 7.11 99.48 0.71 -10.51 15 14 C -0.14 -2.88 9.79 30.59 0.30 -2.58 15 15 C 0.17 4.61 5.14 30.60 0.16 4.77 15 16 F -0.17 -4.41 17.14 44.97 0.77 -3.64 15 17 F -0.18 -5.32 17.14 44.97 0.77 -4.55 15 18 H 0.08 1.55 7.90 -2.39 -0.02 1.53 15 19 H 0.08 2.35 6.69 -2.39 -0.02 2.33 15 20 H 0.06 1.49 8.14 -2.39 -0.02 1.47 15 21 H 0.03 1.05 7.90 -2.39 -0.02 1.03 15 22 H 0.06 2.21 8.14 -2.39 -0.02 2.20 15 23 H 0.34 12.79 8.61 -89.70 -0.77 12.01 15 24 H -0.04 -2.07 8.14 -2.39 -0.02 -2.09 15 25 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 26 H 0.26 14.96 8.31 -92.71 -0.77 14.19 15 27 H 0.13 2.39 8.05 -2.39 -0.02 2.37 15 28 H 0.15 2.14 8.05 -2.39 -0.02 2.12 15 Total: -1.00 -62.84 251.82 4.28 -58.56 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.39 Total: 7.42 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 2.64 Total: -17.13 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -2.31 Total: -86.26 kcal Atomic # 9 Polarization: -9.73 SS G_CDS: 1.54 Total: -8.19 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -62.84 4.28 -58.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594733279.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.774 kcal (2) G-P(sol) polarization free energy of solvation -62.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds