Wall clock time and date at job start Mon Mar 30 2020 02:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99847 * 2 1 4 4 H 1.48492 * 109.47281 * 270.00235 * 3 2 1 5 5 H 1.48500 * 109.47154 * 30.00664 * 3 2 1 6 6 H 1.48500 * 109.46743 * 150.00437 * 3 2 1 7 7 C 1.37877 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99965 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99967 * 179.97438 * 7 2 1 10 10 C 1.53509 * 114.17243 * 179.97438 * 9 7 2 11 11 N 1.47480 * 87.93257 * 139.66861 * 10 9 7 12 12 C 1.39004 * 110.99735 * 221.29795 * 11 10 9 13 13 C 1.39336 * 120.08880 * 179.97438 * 12 11 10 14 14 N 1.31924 * 119.88550 * 179.79114 * 13 12 11 15 15 C 1.32269 * 120.08880 * 0.48767 * 14 13 12 16 16 C 1.38163 * 120.19211 * 359.48573 * 15 14 13 17 17 N 1.32248 * 120.10724 * 0.28068 * 16 15 14 18 18 C 1.47483 * 87.83804 * 332.98897 * 11 10 9 19 19 H 0.97003 * 120.00446 * 359.97438 * 1 2 3 20 20 H 1.08999 * 113.38420 * 46.91576 * 9 7 2 21 21 H 1.09007 * 113.47289 * 24.90675 * 10 9 7 22 22 H 1.08994 * 113.53613 * 254.45044 * 10 9 7 23 23 H 1.08001 * 120.05833 * 0.02562 * 13 12 11 24 24 H 1.08002 * 119.90807 * 179.77150 * 15 14 13 25 25 H 1.07999 * 119.94631 * 180.25988 * 16 15 14 26 26 H 1.08999 * 113.47717 * 141.77137 * 18 11 10 27 27 H 1.08992 * 113.47899 * 272.24692 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.1401 -2.5946 -0.0010 11 7 5.1430 -2.0862 -0.9554 12 6 5.3991 -3.0195 -1.9531 13 6 6.3203 -2.7325 -2.9584 14 7 6.5634 -3.6229 -3.9010 15 6 5.9270 -4.7824 -3.8979 16 6 5.0133 -5.0709 -2.9025 17 7 4.7671 -4.1858 -1.9512 18 6 4.1395 -1.1005 -1.3989 19 1 -0.4851 0.8400 0.0004 20 1 3.9444 -0.5108 0.7296 21 1 3.4904 -3.3621 -0.4217 22 1 4.5631 -2.8817 0.9615 23 1 6.8373 -1.7843 -2.9637 24 1 6.1255 -5.5078 -4.6731 25 1 4.4990 -6.0206 -2.9015 26 1 4.5619 -0.1204 -1.6204 27 1 3.4897 -1.4693 -2.1923 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596433767.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:30 Heat of formation + Delta-G solvation = 98.034284 kcal Electronic energy + Delta-G solvation = -12811.061623 eV Core-core repulsion = 10570.819786 eV Total energy + Delta-G solvation = -2240.241837 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.22178 -38.93811 -34.00020 -32.82272 -31.47128 -28.31644 -25.68770 -24.83459 -23.95474 -22.07248 -18.86157 -17.57266 -17.30052 -16.78402 -16.15469 -15.06909 -14.54280 -14.27112 -13.77683 -13.20911 -12.82914 -12.54814 -11.93615 -11.65341 -11.23303 -10.99658 -10.87187 -10.24236 -10.03614 -9.77084 -9.47629 -9.21008 -8.89961 -8.65576 -8.18884 -6.16711 -4.18473 0.94156 1.29461 3.24415 3.32927 3.35162 3.77561 4.07648 4.34825 4.41347 4.50446 4.84263 5.05927 5.19924 5.40699 5.60007 5.73373 5.88817 6.09693 6.18938 6.36981 6.47220 6.59140 6.66804 7.25136 7.43155 7.59157 7.64915 7.97276 8.42177 8.87235 9.44452 10.95468 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.056392 B = 0.008804 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.408229 B = 3179.549529 C = 3357.028359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.509 4.509 8 H 0.077 0.923 9 C -0.004 4.004 10 C 0.020 3.980 11 N -0.441 5.441 12 C 0.246 3.754 13 C 0.050 3.950 14 N -0.429 5.429 15 C 0.008 3.992 16 C 0.072 3.928 17 N -0.468 5.468 18 C 0.005 3.995 19 H 0.266 0.734 20 H 0.068 0.932 21 H 0.094 0.906 22 H 0.070 0.930 23 H 0.169 0.831 24 H 0.165 0.835 25 H 0.166 0.834 26 H 0.071 0.929 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.083 -5.749 -5.304 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.546 4.546 8 H 0.095 0.905 9 C -0.024 4.024 10 C -0.108 4.108 11 N -0.161 5.161 12 C 0.013 3.987 13 C -0.114 4.114 14 N -0.144 5.144 15 C -0.151 4.151 16 C -0.088 4.088 17 N -0.187 5.187 18 C -0.121 4.121 19 H 0.076 0.924 20 H 0.086 0.914 21 H 0.112 0.888 22 H 0.089 0.911 23 H 0.186 0.814 24 H 0.182 0.818 25 H 0.183 0.817 26 H 0.089 0.911 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.579 -5.416 -5.081 12.926 hybrid contribution -0.241 0.487 -0.436 0.696 sum 10.338 -4.929 -5.517 12.713 Atomic orbital electron populations 1.69902 1.06385 1.27227 1.49720 1.25027 0.94677 0.99199 0.93876 0.86852 0.80636 0.83505 0.78819 1.20095 1.21255 1.18419 1.20871 0.87859 0.94730 1.51178 0.90457 1.20745 0.96853 0.93240 0.91565 1.23872 0.91706 1.00220 0.94992 1.66545 1.32677 1.08846 1.07993 1.21833 0.92276 0.91840 0.92786 1.23311 0.97108 0.99946 0.91053 1.68326 1.21777 1.01691 1.22579 1.23501 0.96329 0.95458 0.99830 1.23632 0.95747 0.98910 0.90543 1.68539 1.22027 1.03082 1.25008 1.24511 0.90550 0.94122 1.02884 0.92448 0.91417 0.88815 0.91132 0.81431 0.81829 0.81702 0.91053 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.96 55.43 0.77 -25.83 15 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 15 3 Si 0.87 20.64 27.41 -169.99 -4.66 15.98 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.26 -5.83 6.22 56.52 0.35 -5.48 15 7 C -0.51 -13.81 9.37 -34.44 -0.32 -14.13 15 8 H 0.08 2.29 8.06 -52.49 -0.42 1.87 15 9 C 0.00 -0.10 2.99 -91.24 -0.27 -0.38 15 10 C 0.02 0.41 6.96 -7.54 -0.05 0.36 15 11 N -0.44 -8.54 6.43 -182.53 -1.17 -9.72 15 12 C 0.25 4.44 5.85 -154.73 -0.90 3.53 15 13 C 0.05 0.80 11.15 -17.10 -0.19 0.61 15 14 N -0.43 -6.48 10.49 -12.88 -0.14 -6.61 15 15 C 0.01 0.10 11.21 -17.39 -0.19 -0.10 15 16 C 0.07 0.98 11.21 -17.40 -0.20 0.79 15 17 N -0.47 -8.21 8.38 -12.24 -0.10 -8.31 15 18 C 0.01 0.11 6.76 -7.53 -0.05 0.06 15 19 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 20 H 0.07 1.56 6.50 -51.93 -0.34 1.22 15 21 H 0.09 2.03 6.63 -51.92 -0.34 1.69 15 22 H 0.07 1.37 8.14 -51.93 -0.42 0.94 15 23 H 0.17 2.35 8.06 -52.49 -0.42 1.93 15 24 H 0.16 1.43 8.06 -52.49 -0.42 1.01 15 25 H 0.17 1.62 8.06 -52.49 -0.42 1.20 15 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 27 H 0.07 1.56 7.85 -51.93 -0.41 1.16 15 LS Contribution 235.87 15.07 3.55 3.55 Total: -1.00 -30.16 235.87 -6.84 -37.00 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -2.81 Total: 1.21 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.28 Total: -7.27 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.64 Total: -50.47 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.66 Total: 15.98 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.16 -6.84 -37.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596433767.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.034 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds