Wall clock time and date at job start Mon Mar 30 2020 02:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33267 * 125.79438 * 2 1 4 4 C 1.31670 * 109.22225 * 180.02562 * 3 2 1 5 5 C 1.43198 * 125.85923 * 179.97438 * 4 3 2 6 6 N 4.66683 * 150.87987 * 359.96219 * 2 1 3 7 7 N 1.36680 * 108.28007 * 0.02562 * 4 3 2 8 8 C 1.46506 * 126.49200 * 180.02562 * 7 4 3 9 9 C 1.50698 * 109.47196 * 269.97707 * 8 7 4 10 10 H 1.07998 * 120.00107 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99928 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99815 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00261 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46820 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47401 * 119.99455 * 13 11 9 16 16 H 1.48500 * 109.47188 * 240.00119 * 13 11 9 17 17 C 1.35385 * 125.79467 * 180.02562 * 2 1 3 18 18 C 1.50696 * 126.46336 * 359.70965 * 17 2 1 19 19 H 1.09004 * 109.47150 * 269.97444 * 1 2 3 20 20 H 1.08993 * 109.47032 * 29.97441 * 1 2 3 21 21 H 1.09005 * 109.47059 * 149.97871 * 1 2 3 22 22 H 1.08999 * 109.46957 * 29.97927 * 8 7 4 23 23 H 1.09004 * 109.46899 * 149.97519 * 8 7 4 24 24 H 0.97005 * 119.99904 * 180.02562 * 12 11 9 25 25 H 1.09006 * 109.47022 * 90.02710 * 18 17 2 26 26 H 1.08995 * 109.47446 * 210.02810 * 18 17 2 27 27 H 1.08997 * 109.46956 * 330.03372 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2864 1.0810 0.0000 4 6 3.5485 0.7054 -0.0006 5 6 4.6835 1.5785 -0.0013 6 7 5.5840 2.2711 -0.0015 7 7 3.5892 -0.6608 -0.0015 8 6 4.7925 -1.4966 -0.0018 9 6 5.2050 -1.7826 -1.4227 10 1 4.6284 -1.3823 -2.2435 11 6 6.3180 -2.5563 -1.6750 12 7 7.0199 -3.0442 -0.6755 13 14 6.8291 -2.9115 -3.4362 14 1 5.8802 -2.2527 -4.3693 15 1 8.1984 -2.3867 -3.6698 16 1 6.8144 -4.3780 -3.6697 17 6 2.2988 -1.0981 -0.0005 18 6 1.8396 -2.5334 0.0050 19 1 -0.3634 -0.0005 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3633 -0.8898 -0.5142 22 1 5.5986 -0.9731 0.5122 23 1 4.5831 -2.4350 0.5117 24 1 7.8032 -3.5882 -0.8529 25 1 1.7252 -2.8822 -1.0214 26 1 2.5784 -3.1493 0.5178 27 1 0.8831 -2.6068 0.5224 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606252622.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:04 Heat of formation + Delta-G solvation = 56.978411 kcal Electronic energy + Delta-G solvation = -12708.069434 eV Core-core repulsion = 10466.047280 eV Total energy + Delta-G solvation = -2242.022153 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.18896 -37.71419 -36.24087 -34.32554 -33.58459 -30.27519 -28.74860 -27.47572 -25.44312 -22.62814 -20.85456 -19.40421 -18.87554 -17.12436 -16.74052 -16.10342 -14.97931 -14.83200 -14.68488 -14.51449 -14.01654 -13.84048 -13.62125 -13.59742 -13.40265 -13.09444 -12.86220 -12.75956 -12.72941 -12.29830 -11.88771 -11.14132 -10.79549 -10.50297 -9.08631 -8.43403 -6.59779 0.32937 1.14230 1.33990 1.37241 1.48358 1.62323 1.91408 2.28228 2.43813 2.72103 2.90714 3.83271 4.07666 4.20275 4.42211 4.71476 4.81270 4.91678 5.06398 5.13711 5.15220 5.23249 5.45604 5.58326 5.67629 5.79914 5.97171 6.23677 6.51362 6.89062 7.13065 8.65339 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.011129 C = 0.009223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.763783 B = 2515.399764 C = 3035.050971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.014 4.014 3 N -0.453 5.453 4 C 0.200 3.800 5 C 0.321 3.679 6 N -0.420 5.420 7 N -0.401 5.401 8 C 0.242 3.758 9 C -0.558 4.558 10 H 0.058 0.942 11 C 0.026 3.974 12 N -0.915 5.915 13 Si 0.967 3.033 14 H -0.269 1.269 15 H -0.280 1.280 16 H -0.265 1.265 17 C 0.018 3.982 18 C -0.074 4.074 19 H 0.085 0.915 20 H 0.070 0.930 21 H 0.095 0.905 22 H 0.024 0.976 23 H 0.059 0.941 24 H 0.274 0.726 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.865 -1.771 0.681 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.150 4.150 3 N -0.175 5.175 4 C -0.055 4.055 5 C 0.004 3.996 6 N -0.100 5.100 7 N -0.081 5.081 8 C 0.122 3.878 9 C -0.596 4.596 10 H 0.076 0.924 11 C -0.176 4.176 12 N -0.552 5.552 13 Si 0.791 3.209 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.189 1.189 17 C -0.104 4.104 18 C -0.132 4.132 19 H 0.103 0.897 20 H 0.089 0.911 21 H 0.114 0.886 22 H 0.042 0.958 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.080 0.920 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.384 -0.094 0.743 10.411 hybrid contribution 1.037 -1.061 -0.696 1.639 sum -9.347 -1.154 0.047 9.418 Atomic orbital electron populations 1.20166 0.83652 1.03976 1.03628 1.21313 0.98391 0.86252 1.09046 1.70050 0.98009 1.32024 1.17448 1.16963 0.89280 0.80475 1.18739 1.23482 0.91053 0.92365 0.92697 1.81140 1.08729 1.09299 1.10851 1.45920 1.09070 1.05526 1.47546 1.19575 0.79523 0.90152 0.98529 1.21405 1.12790 1.33996 0.91391 0.92381 1.25704 0.95331 0.94459 1.02074 1.69996 1.18120 1.34107 1.33012 0.85353 0.78063 0.78706 0.78748 1.19339 1.20568 1.18925 1.22094 0.82115 0.99835 1.06401 1.20438 1.02742 0.85914 1.04077 0.89682 0.91105 0.88603 0.95758 0.92301 0.91653 0.89701 0.91961 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.18 10.04 71.24 0.72 -0.46 15 2 C -0.01 -0.45 7.07 41.68 0.29 -0.16 15 3 N -0.45 -17.84 11.27 -181.35 -2.04 -19.88 15 4 C 0.20 8.63 7.66 135.09 1.03 9.66 15 5 C 0.32 14.30 15.33 88.33 1.35 15.65 15 6 N -0.42 -19.03 18.54 19.00 0.35 -18.68 15 7 N -0.40 -17.06 2.76 -509.94 -1.41 -18.47 15 8 C 0.24 11.67 5.53 85.63 0.47 12.14 15 9 C -0.56 -29.20 9.39 25.60 0.24 -28.96 15 10 H 0.06 3.11 7.81 -2.91 -0.02 3.08 15 11 C 0.03 1.37 5.46 84.65 0.46 1.84 15 12 N -0.91 -49.89 13.29 21.45 0.28 -49.61 15 13 Si 0.97 41.52 29.54 68.60 2.03 43.54 15 14 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 15 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 16 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 17 C 0.02 0.63 6.95 41.21 0.29 0.92 15 18 C -0.07 -1.89 9.77 71.23 0.70 -1.19 15 19 H 0.08 1.46 8.14 -2.38 -0.02 1.44 15 20 H 0.07 1.46 8.14 -2.39 -0.02 1.44 15 21 H 0.10 1.48 7.79 -2.38 -0.02 1.46 15 22 H 0.02 1.29 7.82 -2.39 -0.02 1.27 15 23 H 0.06 2.81 7.17 -2.39 -0.02 2.79 15 24 H 0.27 14.02 8.31 -92.70 -0.77 13.25 15 25 H 0.08 2.07 8.14 -2.38 -0.02 2.06 15 26 H 0.06 1.73 7.19 -2.39 -0.02 1.71 15 27 H 0.12 2.01 7.80 -2.39 -0.02 1.99 15 Total: -1.00 -61.13 252.22 5.95 -55.19 By element: Atomic # 1 Polarization: -2.71 SS G_CDS: 1.18 Total: -1.53 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 5.56 Total: 9.44 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -2.82 Total: -106.64 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -61.13 5.95 -55.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606252622.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.165 kcal (2) G-P(sol) polarization free energy of solvation -61.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds