Wall clock time and date at job start Mon Mar 30 2020 02:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 112.91005 * 2 1 4 4 C 1.46895 * 111.00214 * 311.25197 * 3 2 1 5 5 C 1.50701 * 109.47500 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99491 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00377 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00349 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99946 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.46751 * 89.99842 * 9 7 5 11 11 H 1.48493 * 109.47281 * 209.99862 * 9 7 5 12 12 H 1.48502 * 109.47227 * 330.00374 * 9 7 5 13 13 C 1.53784 * 113.61395 * 131.25365 * 2 1 3 14 14 C 1.53787 * 87.07923 * 89.11282 * 13 2 1 15 15 F 1.39903 * 113.60976 * 139.98062 * 14 13 2 16 16 F 1.39901 * 113.61589 * 270.88227 * 14 13 2 17 17 C 1.53779 * 113.61251 * 228.74893 * 2 1 3 18 18 H 1.09004 * 109.47128 * 288.75087 * 1 2 3 19 19 H 1.09006 * 109.47304 * 48.74708 * 1 2 3 20 20 H 1.09004 * 109.47533 * 168.74770 * 1 2 3 21 21 H 1.00904 * 111.00324 * 187.29583 * 3 2 1 22 22 H 1.09001 * 109.47297 * 300.00055 * 4 3 2 23 23 H 1.09010 * 109.47232 * 59.99790 * 4 3 2 24 24 H 0.97002 * 120.00484 * 179.97438 * 8 7 5 25 25 H 1.09004 * 113.61451 * 334.56768 * 13 2 1 26 26 H 1.08994 * 113.61477 * 203.66069 * 13 2 1 27 27 H 1.09006 * 113.61307 * 156.33907 * 17 2 1 28 28 H 1.09007 * 113.61642 * 25.43664 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1018 1.3531 0.0000 4 6 1.4739 2.1900 -1.0310 5 6 2.0843 3.5675 -1.0004 6 1 2.8614 3.7980 -0.2866 7 6 1.6507 4.5335 -1.8835 8 7 2.1838 5.7355 -1.8571 9 14 0.3072 4.1346 -3.1185 10 1 -1.0188 4.4376 -2.5224 11 1 0.4993 4.9550 -4.3413 12 1 0.3728 2.6941 -3.4734 13 6 2.1460 -0.9291 1.0593 14 6 2.0928 -2.0426 -0.0001 15 9 3.2207 -2.8703 -0.0001 16 9 0.8913 -2.7593 -0.0001 17 6 2.1459 -0.9291 -1.0594 18 1 -0.3633 0.3304 0.9732 19 1 -0.3634 0.6777 -0.7726 20 1 -0.3634 -1.0079 -0.2005 21 1 3.1033 1.3225 -0.1196 22 1 1.6363 1.7420 -2.0113 23 1 0.4035 2.2629 -0.8377 24 1 1.8790 6.4150 -2.4787 25 1 1.4945 -1.1087 1.9146 26 1 3.1590 -0.6500 1.3489 27 1 3.1591 -0.6499 -1.3489 28 1 1.4944 -1.1086 -1.9147 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642840519.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:43 Heat of formation + Delta-G solvation = -79.022397 kcal Electronic energy + Delta-G solvation = -13708.013019 eV Core-core repulsion = 11009.404241 eV Total energy + Delta-G solvation = -2698.608777 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.75442 -47.08607 -38.90064 -33.83137 -31.88634 -28.53660 -26.97402 -26.17435 -22.74548 -21.02072 -18.80021 -17.67416 -16.80149 -16.41264 -16.11468 -15.00751 -14.34505 -14.11805 -13.94810 -13.49175 -13.31283 -13.24465 -12.67970 -12.19274 -12.10051 -11.95082 -11.53996 -11.08889 -10.95829 -10.54100 -10.39401 -10.21550 -9.88564 -9.32735 -8.64222 -7.63173 -6.11374 -4.09998 3.24361 3.32167 3.32956 3.57732 3.90000 4.36415 4.37311 4.44846 4.58228 5.04838 5.22363 5.38616 5.51278 5.54578 5.72701 5.76448 6.02272 6.11363 6.19310 6.44491 6.69824 6.92825 7.50572 7.77358 8.17299 8.56251 8.96056 9.49873 11.01814 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.057952 B = 0.008335 C = 0.007947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.041733 B = 3358.350969 C = 3522.572638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.105 3.895 3 N -0.657 5.657 4 C 0.162 3.838 5 C -0.519 4.519 6 H 0.079 0.921 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.875 3.125 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.267 1.267 13 C -0.152 4.152 14 C 0.252 3.748 15 F -0.196 7.196 16 F -0.182 7.182 17 C -0.200 4.200 18 H 0.069 0.931 19 H 0.071 0.929 20 H 0.064 0.936 21 H 0.341 0.659 22 H -0.013 1.013 23 H 0.030 0.970 24 H 0.264 0.736 25 H 0.093 0.907 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -13.969 2.424 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.011 3.989 3 N -0.286 5.286 4 C 0.035 3.965 5 C -0.558 4.558 6 H 0.097 0.903 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.191 4.191 14 C 0.215 3.785 15 F -0.177 7.177 16 F -0.162 7.162 17 C -0.241 4.241 18 H 0.088 0.912 19 H 0.090 0.910 20 H 0.083 0.917 21 H 0.159 0.841 22 H 0.005 0.995 23 H 0.048 0.952 24 H 0.074 0.926 25 H 0.111 0.889 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.284 -13.562 2.839 14.043 hybrid contribution -0.253 -0.685 -1.556 1.719 sum -2.536 -14.246 1.284 14.527 Atomic orbital electron populations 1.21787 0.91889 1.02318 1.03635 1.21973 0.95647 0.89321 0.91963 1.60342 1.08910 1.06894 1.52476 1.20071 0.95729 0.93004 0.87711 1.21046 1.22236 0.93541 1.18944 0.90262 1.24889 0.96406 0.94846 0.97048 1.69891 1.42752 1.03314 1.37774 0.86857 0.82800 0.78761 0.81331 1.20034 1.21145 1.19205 1.24238 1.04712 0.92254 0.97898 1.22057 0.71320 0.82863 1.02278 1.92981 1.51279 1.76034 1.97382 1.92962 1.45268 1.80640 1.97366 1.25054 1.04794 0.94960 0.99268 0.91192 0.91008 0.91731 0.84059 0.99544 0.95250 0.92564 0.88863 0.86943 0.87205 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.75 37.16 0.33 -1.79 15 2 C 0.10 1.64 1.24 -130.79 -0.16 1.48 15 3 N -0.66 -12.68 6.43 -100.40 -0.65 -13.33 15 4 C 0.16 3.74 3.85 -4.98 -0.02 3.72 15 5 C -0.52 -14.43 9.87 -34.44 -0.34 -14.77 15 6 H 0.08 2.39 8.06 -52.48 -0.42 1.97 15 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 8 N -0.90 -27.19 13.96 55.43 0.77 -26.42 15 9 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 15 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 15 13 C -0.15 -2.02 7.25 -25.91 -0.19 -2.21 15 14 C 0.25 3.49 3.27 -25.92 -0.08 3.40 15 15 F -0.20 -2.84 17.41 2.25 0.04 -2.80 15 16 F -0.18 -2.60 15.53 2.25 0.03 -2.57 15 17 C -0.20 -2.88 7.05 -25.92 -0.18 -3.07 15 18 H 0.07 1.02 8.14 -51.93 -0.42 0.59 15 19 H 0.07 1.19 6.02 -51.93 -0.31 0.87 15 20 H 0.06 0.87 6.22 -51.93 -0.32 0.55 15 21 H 0.34 6.30 8.57 -39.29 -0.34 5.96 15 22 H -0.01 -0.30 7.15 -51.93 -0.37 -0.68 15 23 H 0.03 0.69 5.67 -51.92 -0.29 0.39 15 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 25 H 0.09 1.13 8.10 -51.93 -0.42 0.71 15 26 H 0.11 1.39 8.14 -51.93 -0.42 0.97 15 27 H 0.11 1.52 8.03 -51.93 -0.42 1.10 15 28 H 0.09 1.26 8.10 -51.93 -0.42 0.84 15 LS Contribution 238.81 15.07 3.60 3.60 Total: -1.00 -29.40 238.81 -4.95 -34.35 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -3.33 Total: 2.11 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -0.75 Total: -11.34 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.13 Total: -39.74 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.07 Total: -5.37 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.40 -4.95 -34.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642840519.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.676 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds