Wall clock time and date at job start Mon Mar 30 2020 02:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 112.84963 * 2 1 4 4 N 1.46500 * 109.46998 * 50.33397 * 3 2 1 5 5 C 1.36931 * 120.00396 * 180.02562 * 4 3 2 6 6 H 1.08003 * 119.99774 * 359.97438 * 5 4 3 7 7 C 1.38806 * 120.00545 * 180.02562 * 5 4 3 8 8 N 1.31622 * 119.99833 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00256 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47110 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47258 * 119.99748 * 9 7 5 12 12 H 1.48508 * 109.46891 * 239.99707 * 9 7 5 13 13 C 1.53781 * 113.61645 * 131.19585 * 2 1 3 14 14 C 1.53957 * 87.01759 * 89.23307 * 13 2 1 15 15 F 1.39905 * 113.53506 * 270.81037 * 14 13 2 16 16 F 1.39896 * 113.74324 * 139.94505 * 14 13 2 17 17 C 1.53783 * 87.11454 * 25.36149 * 14 13 2 18 18 H 1.08999 * 109.47105 * 69.66763 * 1 2 3 19 19 H 1.09000 * 109.46611 * 189.66636 * 1 2 3 20 20 H 1.08998 * 109.47047 * 309.66828 * 1 2 3 21 21 H 1.08993 * 109.46955 * 170.33622 * 3 2 1 22 22 H 1.09000 * 109.47050 * 290.33451 * 3 2 1 23 23 H 0.97010 * 119.99909 * 359.97438 * 4 3 2 24 24 H 0.97001 * 119.99731 * 180.02562 * 8 7 5 25 25 H 1.08998 * 113.61545 * 203.74825 * 13 2 1 26 26 H 1.08993 * 113.61303 * 334.65282 * 13 2 1 27 27 H 1.08997 * 113.61737 * 220.09125 * 17 14 13 28 28 H 1.09000 * 113.61138 * 89.18266 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 7 1.5013 2.2023 1.0632 5 6 1.8764 3.5051 1.2556 6 1 2.6318 3.9485 0.6237 7 6 1.2867 4.2557 2.2633 8 7 0.3665 3.7153 3.0338 9 14 1.7990 6.0328 2.5261 10 1 2.8438 6.3983 1.5362 11 1 0.6201 6.9188 2.3522 12 1 2.3409 6.1938 3.8994 13 6 2.1461 -0.9280 1.0602 14 6 2.0951 -2.0419 -0.0013 15 9 0.8944 -2.7599 -0.0005 16 9 3.2230 -2.8696 -0.0039 17 6 2.1461 -0.9280 -1.0603 18 1 -0.3633 0.3571 -0.9636 19 1 -0.3632 -1.0131 0.1726 20 1 -0.3633 0.6560 0.7910 21 1 3.1988 1.3514 0.1725 22 1 1.9362 1.8835 -0.9636 23 1 0.8225 1.8043 1.6306 24 1 -0.0459 4.2400 3.7377 25 1 3.1586 -0.6477 1.3506 26 1 1.4940 -1.1079 1.9149 27 1 1.4940 -1.1079 -1.9150 28 1 3.1586 -0.6476 -1.3507 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642871802.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:41 Heat of formation + Delta-G solvation = -74.278866 kcal Electronic energy + Delta-G solvation = -13667.948242 eV Core-core repulsion = 10969.545160 eV Total energy + Delta-G solvation = -2698.403082 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.66553 -46.99419 -38.72742 -34.14954 -31.05310 -28.55180 -26.15880 -25.92347 -23.17555 -21.42228 -18.51321 -17.58283 -16.86536 -16.31944 -16.02711 -14.70645 -14.14243 -13.90862 -13.80919 -13.48906 -13.30834 -12.90710 -12.72263 -12.40624 -11.90651 -11.63748 -11.01174 -10.89658 -10.72346 -10.49371 -10.27137 -10.16205 -9.94087 -9.63998 -8.90050 -6.94003 -5.78726 -3.07270 3.42363 3.48082 3.50302 3.67657 3.99291 4.44735 4.53555 4.60353 4.68606 5.46087 5.53293 5.59879 5.64081 5.65668 5.78394 5.95646 6.06014 6.24960 6.28252 6.39890 6.63578 6.72059 6.83033 7.68816 8.40488 9.51958 10.09162 10.43984 11.44352 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.069281 B = 0.007444 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.053399 B = 3760.607573 C = 3860.267382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C 0.171 3.829 4 N -0.730 5.730 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.149 4.149 14 C 0.248 3.752 15 F -0.182 7.182 16 F -0.198 7.198 17 C -0.155 4.155 18 H 0.059 0.941 19 H 0.057 0.943 20 H 0.078 0.922 21 H 0.023 0.977 22 H 0.024 0.976 23 H 0.385 0.615 24 H 0.255 0.745 25 H 0.111 0.889 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.497 -9.948 -6.610 12.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 C 0.044 3.956 4 N -0.375 5.375 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.187 4.187 14 C 0.212 3.788 15 F -0.163 7.163 16 F -0.179 7.179 17 C -0.193 4.193 18 H 0.078 0.922 19 H 0.076 0.924 20 H 0.097 0.903 21 H 0.041 0.959 22 H 0.042 0.958 23 H 0.220 0.780 24 H 0.065 0.935 25 H 0.129 0.871 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.579 -9.830 -6.627 12.133 hybrid contribution 0.031 0.623 0.399 0.741 sum 2.610 -9.207 -6.228 11.418 Atomic orbital electron populations 1.21688 0.92154 1.02176 1.03257 1.21843 0.96748 0.95871 0.93650 1.20525 0.94911 0.87349 0.92847 1.42403 1.47625 1.10522 1.36991 1.19279 1.17433 0.87916 1.12479 0.91118 1.24733 0.99201 0.98435 0.98573 1.69667 1.29910 1.36178 1.22479 0.86115 0.77617 0.84916 0.77527 1.20556 1.21871 1.21876 1.24201 1.04592 0.92115 0.97798 1.22358 0.71237 0.82893 1.02339 1.92964 1.45380 1.80585 1.97364 1.92972 1.51428 1.76118 1.97378 1.24167 1.04271 0.93133 0.97745 0.92220 0.92371 0.90313 0.95915 0.95803 0.77957 0.93531 0.87079 0.88965 0.89195 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.88 37.16 0.33 -1.83 15 2 C -0.08 -1.27 1.07 -153.69 -0.16 -1.44 15 3 C 0.17 3.33 5.71 -4.04 -0.02 3.30 15 4 N -0.73 -18.00 5.32 -59.91 -0.32 -18.32 15 5 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 15 6 H 0.07 1.90 7.83 -52.48 -0.41 1.49 15 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 15 8 N -0.93 -27.96 13.06 55.49 0.72 -27.23 15 9 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 15 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 15 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 15 13 C -0.15 -2.25 7.01 -25.83 -0.18 -2.43 15 14 C 0.25 3.53 3.26 -25.82 -0.08 3.45 15 15 F -0.18 -2.73 15.52 2.25 0.03 -2.70 15 16 F -0.20 -2.93 17.41 2.25 0.04 -2.90 15 17 C -0.15 -2.02 7.02 -25.92 -0.18 -2.20 15 18 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 19 H 0.06 0.85 6.20 -51.93 -0.32 0.53 15 20 H 0.08 1.46 6.36 -51.93 -0.33 1.13 15 21 H 0.02 0.44 7.98 -51.93 -0.41 0.03 15 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 23 H 0.39 9.92 6.04 -40.82 -0.25 9.68 15 24 H 0.25 7.37 8.31 -40.82 -0.34 7.03 15 25 H 0.11 1.64 7.99 -51.93 -0.41 1.22 15 26 H 0.09 1.41 8.10 -51.93 -0.42 0.99 15 27 H 0.09 1.06 8.10 -51.93 -0.42 0.64 15 28 H 0.11 1.29 8.10 -51.93 -0.42 0.87 15 LS Contribution 241.92 15.07 3.65 3.65 Total: -1.00 -29.56 241.92 -4.83 -34.39 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.38 Total: 4.31 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.55 Total: -8.41 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.41 Total: -45.55 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.07 Total: -5.59 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.56 -4.83 -34.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642871802.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.885 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds