Wall clock time and date at job start Mon Mar 30 2020 01:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29570 * 120.00556 * 2 1 4 4 O 1.21803 * 119.99348 * 0.02562 * 3 2 1 5 5 C 1.34706 * 116.99499 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00144 * 0.02562 * 5 4 3 7 7 C 1.38726 * 119.99859 * 179.97438 * 5 4 3 8 8 N 1.31521 * 120.00071 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99925 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47670 * 89.99480 * 9 7 5 11 11 H 1.48507 * 109.47093 * 209.99772 * 9 7 5 12 12 H 1.48507 * 109.47137 * 329.99353 * 9 7 5 13 13 C 1.47516 * 119.99691 * 180.02562 * 2 1 3 14 14 C 1.39689 * 120.15485 * 179.97438 * 13 2 1 15 15 C 1.37926 * 119.83892 * 179.97438 * 14 13 2 16 16 C 1.38382 * 120.15973 * 0.02562 * 15 14 13 17 17 C 1.38377 * 120.31371 * 0.25709 * 16 15 14 18 18 C 1.37931 * 120.15423 * 359.47901 * 17 16 15 19 19 H 1.08993 * 109.47086 * 270.00221 * 1 2 3 20 20 H 1.09007 * 109.46859 * 29.99715 * 1 2 3 21 21 H 1.08999 * 109.47073 * 149.99245 * 1 2 3 22 22 H 0.96994 * 119.99980 * 179.97438 * 8 7 5 23 23 H 1.07995 * 120.08228 * 0.02562 * 14 13 2 24 24 H 1.07998 * 119.92101 * 180.02562 * 15 14 13 25 25 H 1.08002 * 119.84072 * 179.97438 * 16 15 14 26 26 H 1.08001 * 119.92033 * 179.72471 * 17 16 15 27 27 H 1.08001 * 120.07509 * 180.25451 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1550 1.1220 0.0000 4 8 1.5459 2.1769 0.0005 5 6 2.2797 3.3066 0.0010 6 1 3.3582 3.2500 0.0005 7 6 1.6499 4.5427 0.0010 8 7 2.3663 5.6457 0.0020 9 14 -0.2154 4.6405 0.0010 10 1 -0.7099 4.6663 1.4011 11 1 -0.6463 5.8773 -0.6990 12 1 -0.7733 3.4556 -0.6992 13 6 2.2445 -1.2776 -0.0006 14 6 3.6414 -1.2814 -0.0011 15 6 4.3244 -2.4797 -0.0011 16 6 3.6291 -3.6762 -0.0011 17 6 2.2454 -3.6799 -0.0065 18 6 1.5493 -2.4892 -0.0010 19 1 -0.3633 0.0000 1.0276 20 1 -0.3633 0.8901 -0.5138 21 1 -0.3633 -0.8899 -0.5139 22 1 1.9260 6.5099 0.0016 23 1 4.1853 -0.3484 -0.0007 24 1 5.4044 -2.4842 -0.0011 25 1 4.1692 -4.6115 -0.0015 26 1 1.7092 -4.6175 -0.0109 27 1 0.4693 -2.4936 -0.0011 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687679444.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:46 Heat of formation + Delta-G solvation = 28.467956 kcal Electronic energy + Delta-G solvation = -12439.143845 eV Core-core repulsion = 10163.592635 eV Total energy + Delta-G solvation = -2275.551210 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.17435 -39.87183 -35.99019 -34.47681 -31.91516 -31.19177 -29.43855 -26.92253 -23.97109 -23.10289 -21.15540 -20.54709 -18.24569 -17.49453 -17.03905 -16.77168 -15.91325 -15.49726 -15.13143 -14.56869 -14.40512 -14.22835 -14.11208 -13.43104 -12.94513 -12.85018 -12.80342 -12.04651 -11.94032 -11.83311 -11.26078 -10.57009 -10.31970 -9.78529 -9.08687 -8.58334 -6.31301 0.13266 0.58240 1.29504 1.32565 1.48466 1.71876 2.22046 2.70686 2.83746 3.09912 3.85367 4.13241 4.21834 4.33606 4.39902 4.60894 4.69872 4.74403 4.77721 5.08226 5.22930 5.26403 5.47021 5.61987 5.67153 5.75883 5.83699 6.18412 6.54573 6.71446 8.19641 8.55117 Molecular weight = 205.08amu Principal moments of inertia in cm(-1) A = 0.062215 B = 0.007757 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.946970 B = 3608.892231 C = 4043.694507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.002 4.002 3 N -0.373 5.373 4 O -0.026 6.026 5 C -0.396 4.396 6 H 0.061 0.939 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.973 3.027 10 H -0.260 1.260 11 H -0.260 1.260 12 H -0.259 1.259 13 C -0.027 4.027 14 C -0.132 4.132 15 C -0.124 4.124 16 C -0.125 4.125 17 C -0.114 4.114 18 C -0.117 4.117 19 H 0.074 0.926 20 H 0.045 0.955 21 H 0.099 0.901 22 H 0.290 0.710 23 H 0.097 0.903 24 H 0.137 0.863 25 H 0.154 0.846 26 H 0.159 0.841 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.120 -16.988 -0.009 17.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.176 4.176 3 N -0.092 5.092 4 O -0.082 6.082 5 C -0.473 4.473 6 H 0.079 0.921 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.184 1.184 12 H -0.183 1.183 13 C -0.028 4.028 14 C -0.152 4.152 15 C -0.142 4.142 16 C -0.143 4.143 17 C -0.132 4.132 18 C -0.137 4.137 19 H 0.092 0.908 20 H 0.064 0.936 21 H 0.118 0.882 22 H 0.100 0.900 23 H 0.115 0.885 24 H 0.155 0.845 25 H 0.171 0.829 26 H 0.177 0.823 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.415 -16.498 -0.012 16.847 hybrid contribution -0.697 0.865 0.012 1.111 sum -4.112 -15.633 -0.001 16.164 Atomic orbital electron populations 1.20976 0.91323 1.03134 1.02829 1.22784 0.94485 0.89598 1.10764 1.70179 1.35853 0.93236 1.09906 1.82855 1.35381 1.09853 1.80106 1.20635 0.91180 0.81187 1.54311 0.92131 1.25229 1.05628 0.92390 0.94819 1.69695 1.38733 0.98388 1.48671 0.85219 0.76689 0.78982 0.79809 1.18452 1.18390 1.18281 1.18434 0.92846 0.90577 1.00964 1.21348 0.94056 0.98657 1.01159 1.21311 1.00799 0.91964 1.00153 1.21577 0.94808 0.98271 0.99687 1.21437 0.94523 0.98208 0.98998 1.21459 1.00979 0.90676 1.00551 0.90754 0.93625 0.88232 0.89965 0.88501 0.84483 0.82864 0.82328 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.37 9.26 71.24 0.66 -3.71 15 2 C 0.00 -0.10 7.08 45.34 0.32 0.22 15 3 N -0.37 -19.56 9.64 -42.88 -0.41 -19.98 15 4 O -0.03 -1.45 7.53 64.03 0.48 -0.96 15 5 C -0.40 -24.32 10.60 67.94 0.72 -23.60 15 6 H 0.06 4.09 8.06 -2.91 -0.02 4.06 15 7 C 0.02 1.17 5.49 84.86 0.47 1.63 15 8 N -0.91 -54.68 13.96 21.63 0.30 -54.38 15 9 Si 0.97 44.11 28.62 68.60 1.96 46.07 15 10 H -0.26 -11.23 7.11 99.48 0.71 -10.52 15 11 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 12 H -0.26 -11.55 7.11 99.48 0.71 -10.84 15 13 C -0.03 -0.98 5.87 -20.13 -0.12 -1.10 15 14 C -0.13 -4.77 9.58 22.55 0.22 -4.55 15 15 C -0.12 -3.38 10.03 22.23 0.22 -3.15 15 16 C -0.12 -2.66 10.04 22.34 0.22 -2.44 15 17 C -0.11 -2.39 10.03 22.23 0.22 -2.16 15 18 C -0.12 -3.12 9.36 22.55 0.21 -2.91 15 19 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 20 H 0.04 1.78 7.42 -2.38 -0.02 1.77 15 21 H 0.10 2.67 6.47 -2.39 -0.02 2.66 15 22 H 0.29 15.66 8.31 -92.71 -0.77 14.89 15 23 H 0.10 4.02 7.56 -2.91 -0.02 4.00 15 24 H 0.14 3.07 8.06 -2.91 -0.02 3.04 15 25 H 0.15 2.14 8.06 -2.91 -0.02 2.12 15 26 H 0.16 2.08 8.06 -2.91 -0.02 2.06 15 27 H 0.15 3.13 6.36 -2.91 -0.02 3.11 15 Total: -1.00 -69.10 244.91 6.64 -62.45 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.16 Total: 8.57 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 3.15 Total: -41.77 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -0.11 Total: -74.36 kcal Atomic # 8 Polarization: -1.45 SS G_CDS: 0.48 Total: -0.96 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.96 Total: 46.07 kcal Total: -69.10 6.64 -62.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687679444.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.921 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds