Wall clock time and date at job start Mon Mar 30 2020 02:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 120.00265 * 2 1 4 4 H 1.07999 * 120.00629 * 203.29738 * 3 2 1 5 5 C 1.38818 * 119.99810 * 23.30018 * 3 2 1 6 6 N 1.31612 * 119.99852 * 14.37814 * 5 3 2 7 7 Si 1.86802 * 119.99696 * 194.38210 * 5 3 2 8 8 H 1.48500 * 109.47161 * 89.99889 * 7 5 3 9 9 H 1.48507 * 109.46963 * 209.99433 * 7 5 3 10 10 H 1.48499 * 109.47303 * 329.99859 * 7 5 3 11 11 C 1.46507 * 120.00022 * 180.27432 * 2 1 3 12 12 C 1.52994 * 109.47100 * 89.99930 * 11 2 1 13 13 C 1.52996 * 115.55079 * 325.67329 * 12 11 2 14 14 C 1.52998 * 117.49967 * 180.02562 * 12 11 2 15 15 C 1.52997 * 60.00096 * 252.51011 * 14 12 11 16 16 F 1.39900 * 117.50131 * 252.51174 * 15 14 12 17 17 F 1.39898 * 117.49987 * 107.48545 * 15 14 12 18 18 H 1.09003 * 109.46770 * 274.91840 * 1 2 3 19 19 H 1.08995 * 109.46684 * 34.91636 * 1 2 3 20 20 H 1.09000 * 109.47305 * 154.91972 * 1 2 3 21 21 H 0.97004 * 119.99820 * 180.02562 * 6 5 3 22 22 H 1.09001 * 109.47298 * 210.00508 * 11 2 1 23 23 H 1.09000 * 109.46698 * 330.00369 * 11 2 1 24 24 H 1.09000 * 109.47153 * 34.41576 * 13 12 11 25 25 H 1.09001 * 109.47155 * 154.41750 * 13 12 11 26 26 H 1.09001 * 109.47525 * 274.41399 * 13 12 11 27 27 H 1.08997 * 117.50014 * 359.97438 * 14 12 11 28 28 H 1.09001 * 117.50307 * 144.99913 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1637 1.2240 -0.3699 5 6 1.5405 2.3390 0.4755 6 7 0.4315 2.2551 1.1793 7 14 2.2949 4.0098 0.1165 8 1 1.7414 4.5398 -1.1555 9 1 1.9743 4.9459 1.2239 10 1 3.7685 3.8720 -0.0044 11 6 2.1975 -1.2688 -0.0061 12 6 2.4525 -1.7035 -1.4506 13 6 1.3510 -1.3477 -2.4510 14 6 3.2095 -3.0148 -1.6706 15 6 3.8980 -1.6777 -1.9515 16 9 4.1118 -1.3297 -3.2895 17 9 4.8853 -1.2583 -1.0535 18 1 -0.3633 0.0881 1.0239 19 1 -0.3632 0.8427 -0.5882 20 1 -0.3634 -0.9308 -0.4356 21 1 0.0057 3.0610 1.5112 22 1 3.1499 -1.1409 0.5085 23 1 1.6084 -2.0308 0.5041 24 1 0.9020 -0.3941 -2.1732 25 1 1.7791 -1.2702 -3.4505 26 1 0.5871 -2.1252 -2.4423 27 1 3.5262 -3.5675 -0.7862 28 1 2.9230 -3.6237 -2.5281 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689337350.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:39 Heat of formation + Delta-G solvation = -47.167384 kcal Electronic energy + Delta-G solvation = -14039.164632 eV Core-core repulsion = 11341.937192 eV Total energy + Delta-G solvation = -2697.227440 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.15531 -46.83455 -37.46893 -34.65561 -31.07325 -27.88524 -26.58754 -25.57635 -22.15217 -21.46080 -19.04581 -17.23878 -16.51101 -15.95120 -15.40829 -14.86415 -13.86766 -13.60377 -13.54483 -13.26706 -13.12933 -12.76762 -12.36582 -12.23378 -11.51706 -11.22989 -10.89123 -10.86539 -10.59311 -10.43064 -10.12015 -9.90182 -9.77645 -9.12646 -8.53656 -6.77033 -5.72175 -3.19200 3.41011 3.45802 3.47482 3.50031 3.69565 4.48307 4.74485 4.79499 5.12984 5.42095 5.59692 5.66198 5.79963 5.99105 6.10811 6.19069 6.40341 6.48996 6.70206 6.75283 6.91029 7.32709 7.71567 7.85557 8.39906 9.24237 9.86246 10.34508 11.32733 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.037341 B = 0.011955 C = 0.010379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.663025 B = 2341.606941 C = 2697.144403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.592 5.592 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.177 3.823 12 C -0.121 4.121 13 C -0.119 4.119 14 C -0.184 4.184 15 C 0.189 3.811 16 F -0.170 7.170 17 F -0.162 7.162 18 H 0.032 0.968 19 H 0.040 0.960 20 H 0.002 0.998 21 H 0.252 0.748 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.114 0.886 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.461 -9.108 -5.186 10.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.314 5.314 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.048 3.952 12 C -0.125 4.125 13 C -0.176 4.176 14 C -0.222 4.222 15 C 0.152 3.848 16 F -0.150 7.150 17 F -0.143 7.143 18 H 0.050 0.950 19 H 0.059 0.941 20 H 0.021 0.979 21 H 0.062 0.938 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.133 0.867 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.373 -8.912 -5.091 10.534 hybrid contribution 0.692 1.041 -0.343 1.296 sum 3.065 -7.871 -5.434 10.043 Atomic orbital electron populations 1.20875 0.82479 0.95600 0.99595 1.43847 1.01791 1.00410 1.85307 1.19201 0.98539 0.85433 1.35287 0.91397 1.24999 0.98026 0.98513 0.97907 1.70074 1.20581 1.27260 1.37189 0.86277 0.78906 0.84132 0.77434 1.21461 1.21735 1.20391 1.20334 0.97240 0.89084 0.88561 1.24104 0.90059 0.95622 1.02743 1.21361 0.96276 1.03851 0.96072 1.24417 1.01636 0.91507 1.04650 1.20282 0.88930 1.02037 0.73526 1.92939 1.95720 1.93370 1.33001 1.92976 1.63828 1.91444 1.66007 0.94991 0.94097 0.97917 0.93760 0.92097 0.92836 0.88801 0.93092 0.92388 0.86723 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 7.39 59.85 0.44 4.23 15 2 N -0.59 -14.66 2.08 -181.12 -0.38 -15.04 15 3 C -0.26 -7.08 9.64 -15.06 -0.15 -7.22 15 4 H 0.07 1.92 7.87 -52.49 -0.41 1.50 15 5 C 0.00 0.11 5.07 -17.43 -0.09 0.02 15 6 N -0.91 -26.42 10.81 55.49 0.60 -25.82 15 7 Si 0.90 22.30 29.58 -169.99 -5.03 17.27 15 8 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 11 C 0.18 3.61 5.78 -4.04 -0.02 3.58 15 12 C -0.12 -2.14 2.57 -154.51 -0.40 -2.54 15 13 C -0.12 -2.04 8.94 37.16 0.33 -1.71 15 14 C -0.18 -2.56 9.94 -26.73 -0.27 -2.83 15 15 C 0.19 3.39 5.14 -26.73 -0.14 3.25 15 16 F -0.17 -3.13 16.50 2.25 0.04 -3.10 15 17 F -0.16 -3.18 16.50 2.25 0.04 -3.14 15 18 H 0.03 0.83 7.34 -51.93 -0.38 0.45 15 19 H 0.04 1.04 7.38 -51.93 -0.38 0.66 15 20 H 0.00 0.05 7.37 -51.93 -0.38 -0.34 15 21 H 0.25 7.14 8.31 -40.82 -0.34 6.80 15 22 H 0.06 1.30 7.00 -51.93 -0.36 0.93 15 23 H 0.05 0.99 8.07 -51.93 -0.42 0.57 15 24 H 0.09 1.90 5.62 -51.93 -0.29 1.61 15 25 H 0.05 0.83 7.10 -51.93 -0.37 0.46 15 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 27 H 0.11 1.39 8.14 -51.93 -0.42 0.97 15 28 H 0.11 1.30 8.14 -51.93 -0.42 0.88 15 LS Contribution 241.75 15.07 3.64 3.64 Total: -1.00 -29.58 241.75 -4.78 -34.36 By element: Atomic # 1 Polarization: -1.56 SS G_CDS: -3.41 Total: -4.97 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -0.28 Total: -3.21 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.22 Total: -40.86 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.07 Total: -6.24 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.58 -4.78 -34.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689337350.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.810 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds