Wall clock time and date at job start Mon Mar 30 2020 02:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 120.00265 * 2 1 4 4 H 1.07999 * 120.00629 * 203.29738 * 3 2 1 5 5 C 1.38818 * 119.99810 * 23.30018 * 3 2 1 6 6 N 1.31612 * 119.99852 * 14.37814 * 5 3 2 7 7 Si 1.86802 * 119.99696 * 194.38210 * 5 3 2 8 8 H 1.48500 * 109.47161 * 89.99889 * 7 5 3 9 9 H 1.48507 * 109.46963 * 209.99433 * 7 5 3 10 10 H 1.48499 * 109.47303 * 329.99859 * 7 5 3 11 11 C 1.46507 * 120.00022 * 180.27432 * 2 1 3 12 12 C 1.52994 * 109.47100 * 89.99930 * 11 2 1 13 13 C 1.52996 * 115.55079 * 325.67329 * 12 11 2 14 14 C 1.52998 * 117.49967 * 180.02562 * 12 11 2 15 15 C 1.52997 * 60.00096 * 252.51011 * 14 12 11 16 16 F 1.39900 * 117.50131 * 252.51174 * 15 14 12 17 17 F 1.39898 * 117.49987 * 107.48545 * 15 14 12 18 18 H 1.09003 * 109.46770 * 274.91840 * 1 2 3 19 19 H 1.08995 * 109.46684 * 34.91636 * 1 2 3 20 20 H 1.09000 * 109.47305 * 154.91972 * 1 2 3 21 21 H 0.97004 * 119.99820 * 180.02562 * 6 5 3 22 22 H 1.09001 * 109.47298 * 210.00508 * 11 2 1 23 23 H 1.09000 * 109.46698 * 330.00369 * 11 2 1 24 24 H 1.09000 * 109.47153 * 34.41576 * 13 12 11 25 25 H 1.09001 * 109.47155 * 154.41750 * 13 12 11 26 26 H 1.09001 * 109.47525 * 274.41399 * 13 12 11 27 27 H 1.08997 * 117.50014 * 359.97438 * 14 12 11 28 28 H 1.09001 * 117.50307 * 144.99913 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1637 1.2240 -0.3699 5 6 1.5405 2.3390 0.4755 6 7 0.4315 2.2551 1.1793 7 14 2.2949 4.0098 0.1165 8 1 1.7414 4.5398 -1.1555 9 1 1.9743 4.9459 1.2239 10 1 3.7685 3.8720 -0.0044 11 6 2.1975 -1.2688 -0.0061 12 6 2.4525 -1.7035 -1.4506 13 6 1.3510 -1.3477 -2.4510 14 6 3.2095 -3.0148 -1.6706 15 6 3.8980 -1.6777 -1.9515 16 9 4.1118 -1.3297 -3.2895 17 9 4.8853 -1.2583 -1.0535 18 1 -0.3633 0.0881 1.0239 19 1 -0.3632 0.8427 -0.5882 20 1 -0.3634 -0.9308 -0.4356 21 1 0.0057 3.0610 1.5112 22 1 3.1499 -1.1409 0.5085 23 1 1.6084 -2.0308 0.5041 24 1 0.9020 -0.3941 -2.1732 25 1 1.7791 -1.2702 -3.4505 26 1 0.5871 -2.1252 -2.4423 27 1 3.5262 -3.5675 -0.7862 28 1 2.9230 -3.6237 -2.5281 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689337350.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:39 Heat of formation + Delta-G solvation = -64.153327 kcal Electronic energy + Delta-G solvation = -14039.901198 eV Core-core repulsion = 11341.937192 eV Total energy + Delta-G solvation = -2697.964006 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.55343 -48.25447 -38.97776 -36.44809 -33.09086 -29.26723 -28.34217 -27.57904 -23.47896 -23.30545 -20.49718 -18.82963 -18.37602 -17.37089 -16.87273 -16.81679 -15.50884 -15.43135 -15.08988 -14.92756 -14.57092 -14.15330 -13.77887 -13.74805 -13.28222 -12.86281 -12.80905 -12.59226 -12.33812 -12.19980 -11.95406 -11.92100 -11.34065 -10.63809 -10.46415 -8.78950 -7.84680 -5.32967 1.43107 1.44368 1.53134 2.18681 2.36234 2.49218 3.25143 3.37137 3.53962 3.79030 3.91562 4.23943 4.60384 4.64566 4.74926 4.87704 4.94947 4.99247 5.07378 5.12891 5.36560 5.49848 5.63472 5.75298 6.32241 7.15139 7.86647 8.28172 9.17568 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.037341 B = 0.011955 C = 0.010379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.663025 B = 2341.606941 C = 2697.144403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.608 5.608 3 C -0.258 4.258 4 H 0.056 0.944 5 C -0.047 4.047 6 N -0.933 5.933 7 Si 0.959 3.041 8 H -0.285 1.285 9 H -0.290 1.290 10 H -0.276 1.276 11 C 0.175 3.825 12 C -0.139 4.139 13 C -0.113 4.113 14 C -0.128 4.128 15 C 0.153 3.847 16 F -0.177 7.177 17 F -0.179 7.179 18 H 0.004 0.996 19 H 0.013 0.987 20 H 0.042 0.958 21 H 0.249 0.751 22 H 0.046 0.954 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.140 0.860 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 -10.877 -5.967 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.330 5.330 3 C -0.388 4.388 4 H 0.074 0.926 5 C -0.243 4.243 6 N -0.579 5.579 7 Si 0.788 3.212 8 H -0.212 1.212 9 H -0.216 1.216 10 H -0.201 1.201 11 C 0.048 3.952 12 C -0.143 4.143 13 C -0.170 4.170 14 C -0.166 4.166 15 C 0.117 3.883 16 F -0.158 7.158 17 F -0.160 7.160 18 H 0.022 0.978 19 H 0.032 0.968 20 H 0.060 0.940 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.095 0.905 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.158 0.842 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.633 -10.713 -5.886 12.504 hybrid contribution 0.644 1.524 -0.118 1.659 sum 3.278 -9.189 -6.004 11.456 Atomic orbital electron populations 1.20610 0.82202 0.96378 0.97640 1.44007 1.02213 1.01158 1.85581 1.19314 0.98175 0.87060 1.34250 0.92640 1.25653 0.98801 1.01416 0.98404 1.70206 1.21717 1.27614 1.38382 0.85391 0.78188 0.80562 0.77100 1.21227 1.21644 1.20106 1.20451 0.96366 0.87796 0.90608 1.23877 0.90278 0.99377 1.00764 1.21282 0.96710 1.02961 0.96030 1.24563 0.96128 0.89390 1.06499 1.20851 0.88624 1.05729 0.73089 1.92915 1.95728 1.93786 1.33370 1.92935 1.64486 1.91998 1.66594 0.97751 0.96842 0.93995 0.94168 0.93609 0.90484 0.92352 0.92526 0.89523 0.84243 0.83685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.38 7.39 127.77 0.94 9.33 15 2 N -0.61 -29.99 2.08 -726.93 -1.51 -31.50 15 3 C -0.26 -14.47 9.64 84.04 0.81 -13.66 15 4 H 0.06 3.20 7.87 -2.91 -0.02 3.17 15 5 C -0.05 -2.70 5.07 84.86 0.43 -2.27 15 6 N -0.93 -55.37 10.81 21.65 0.23 -55.14 15 7 Si 0.96 46.48 29.58 68.60 2.03 48.51 15 8 H -0.29 -13.62 7.11 99.48 0.71 -12.91 15 9 H -0.29 -13.92 7.11 99.48 0.71 -13.22 15 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 11 C 0.17 6.86 5.78 86.38 0.50 7.36 15 12 C -0.14 -4.56 2.57 -52.19 -0.13 -4.70 15 13 C -0.11 -3.60 8.94 71.98 0.64 -2.96 15 14 C -0.13 -2.97 9.94 30.59 0.30 -2.66 15 15 C 0.15 5.19 5.14 30.59 0.16 5.34 15 16 F -0.18 -6.26 16.50 44.97 0.74 -5.52 15 17 F -0.18 -6.90 16.50 44.97 0.74 -6.16 15 18 H 0.00 0.22 7.34 -2.39 -0.02 0.20 15 19 H 0.01 0.68 7.38 -2.39 -0.02 0.66 15 20 H 0.04 1.62 7.37 -2.39 -0.02 1.61 15 21 H 0.25 14.36 8.31 -92.71 -0.77 13.59 15 22 H 0.05 1.92 7.00 -2.39 -0.02 1.90 15 23 H 0.08 2.63 8.07 -2.39 -0.02 2.61 15 24 H 0.06 2.30 5.62 -2.39 -0.01 2.28 15 25 H 0.06 1.72 7.10 -2.39 -0.02 1.70 15 26 H 0.09 2.22 8.14 -2.39 -0.02 2.20 15 27 H 0.14 2.61 8.14 -2.39 -0.02 2.59 15 28 H 0.15 2.48 8.14 -2.39 -0.02 2.47 15 Total: -1.00 -64.61 241.75 7.04 -57.57 By element: Atomic # 1 Polarization: -4.69 SS G_CDS: 1.15 Total: -3.54 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 3.65 Total: -4.22 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -1.28 Total: -86.64 kcal Atomic # 9 Polarization: -13.16 SS G_CDS: 1.48 Total: -11.68 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -64.61 7.04 -57.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689337350.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.587 kcal (2) G-P(sol) polarization free energy of solvation -64.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds