Wall clock time and date at job start Mon Mar 30 2020 02:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47347 * 2 1 4 4 C 1.36942 * 120.00222 * 272.59716 * 3 2 1 5 5 H 1.08005 * 119.99324 * 8.73235 * 4 3 2 6 6 C 1.38808 * 120.00427 * 188.73655 * 4 3 2 7 7 N 1.31624 * 119.99642 * 24.56458 * 6 4 3 8 8 Si 1.86797 * 120.00213 * 204.56662 * 6 4 3 9 9 H 1.48501 * 109.46730 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46868 * 119.99604 * 8 6 4 11 11 H 1.48495 * 109.47068 * 239.99772 * 8 6 4 12 12 C 1.46503 * 120.00063 * 92.58951 * 3 2 1 13 13 C 1.52994 * 109.47069 * 90.00442 * 12 3 2 14 14 H 1.09002 * 115.54811 * 29.32714 * 13 12 3 15 15 C 1.52997 * 117.50215 * 174.99897 * 13 12 3 16 16 C 1.52997 * 117.49895 * 243.62484 * 13 12 3 17 17 F 1.39900 * 117.49696 * 359.97438 * 16 13 12 18 18 F 1.39901 * 117.50447 * 145.02050 * 16 13 12 19 19 H 1.08998 * 109.47086 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47241 * 300.00033 * 1 2 3 21 21 H 1.08996 * 109.46899 * 60.00105 * 1 2 3 22 22 H 1.09005 * 109.47079 * 119.99904 * 2 1 3 23 23 H 1.08998 * 109.46905 * 239.99559 * 2 1 3 24 24 H 0.97002 * 119.99659 * 180.02562 * 7 6 4 25 25 H 1.09004 * 109.46881 * 210.00357 * 12 3 2 26 26 H 1.09000 * 109.47150 * 330.00246 * 12 3 2 27 27 H 1.09000 * 117.50374 * 214.98318 * 15 13 12 28 28 H 1.09007 * 117.49584 * 359.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1960 2.0446 -1.1847 5 1 1.8456 1.6056 -2.1072 6 6 2.8264 3.2812 -1.2000 7 7 3.6606 3.6065 -0.2353 8 14 2.4907 4.4836 -2.5895 9 1 1.5227 3.8821 -3.5416 10 1 1.9235 5.7379 -2.0325 11 1 3.7593 4.7865 -3.2994 12 6 2.3166 2.0527 1.2675 13 6 3.7790 1.8061 1.6434 14 1 4.4617 1.6616 0.8061 15 6 4.3210 2.5240 2.8810 16 6 4.0557 1.0178 2.9252 17 9 2.9520 0.5781 3.6640 18 9 5.1657 0.1664 2.9331 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 4.1009 4.4708 -0.2458 25 1 2.1446 3.1237 1.1604 26 1 1.6687 1.6569 2.0496 27 1 5.3604 2.8516 2.8581 28 1 3.6358 3.1724 3.4272 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691205621.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:14 Heat of formation + Delta-G solvation = -47.355148 kcal Electronic energy + Delta-G solvation = -13987.698246 eV Core-core repulsion = 11290.462664 eV Total energy + Delta-G solvation = -2697.235582 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.86396 -46.56138 -36.75446 -34.49813 -31.88975 -28.98541 -26.19746 -23.55648 -21.75247 -20.81381 -19.68627 -17.18198 -16.55880 -15.68868 -15.20980 -14.68885 -13.84003 -13.66895 -13.28405 -12.98768 -12.87715 -12.75846 -12.39126 -11.98403 -11.34412 -11.18070 -10.87492 -10.75498 -10.49934 -10.26153 -10.02477 -9.87933 -9.50253 -8.93129 -8.39156 -6.97338 -5.83624 -3.13231 3.36888 3.46390 3.48123 3.88349 4.25135 4.49252 5.16835 5.25926 5.40793 5.53427 5.75325 5.99963 6.16862 6.29494 6.36090 6.49957 6.53991 6.60495 6.83284 6.88508 7.13055 7.29304 7.51434 7.76964 8.27258 9.16548 9.81321 10.27083 11.22574 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.032210 B = 0.012976 C = 0.010112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.089582 B = 2157.390546 C = 2768.380755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.143 3.857 3 N -0.599 5.599 4 C -0.248 4.248 5 H 0.076 0.924 6 C -0.003 4.003 7 N -0.903 5.903 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.293 1.293 12 C 0.200 3.800 13 C -0.064 4.064 14 H 0.136 0.864 15 C -0.172 4.172 16 C 0.133 3.867 17 F -0.176 7.176 18 F -0.180 7.180 19 H 0.037 0.963 20 H 0.044 0.956 21 H 0.051 0.949 22 H 0.038 0.962 23 H 0.044 0.956 24 H 0.253 0.747 25 H 0.091 0.909 26 H 0.026 0.974 27 H 0.104 0.896 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 -2.654 4.324 5.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.016 3.984 3 N -0.319 5.319 4 C -0.377 4.377 5 H 0.093 0.907 6 C -0.200 4.200 7 N -0.549 5.549 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.221 1.221 12 C 0.073 3.927 13 C -0.086 4.086 14 H 0.153 0.847 15 C -0.211 4.211 16 C 0.096 3.904 17 F -0.157 7.157 18 F -0.161 7.161 19 H 0.056 0.944 20 H 0.063 0.937 21 H 0.070 0.930 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.109 0.891 26 H 0.044 0.956 27 H 0.122 0.878 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.920 -2.564 4.330 5.115 hybrid contribution 0.091 0.550 -0.447 0.714 sum -0.828 -2.014 3.883 4.452 Atomic orbital electron populations 1.22311 0.99642 0.99116 1.01450 1.20748 0.92164 0.86468 0.99017 1.44174 1.75479 1.09562 1.02727 1.19327 1.31854 0.99925 0.86549 0.90662 1.24691 0.97886 0.99296 0.98133 1.70131 1.28020 1.21963 1.34773 0.86303 0.77659 0.81724 0.81655 1.20557 1.21682 1.22072 1.20331 0.88007 0.98943 0.85369 1.24640 1.03826 0.90914 0.89218 0.84668 1.24093 1.03683 0.89723 1.03601 1.21234 0.76912 0.87164 1.05046 1.92898 1.52559 1.91254 1.78981 1.92916 1.52324 1.73541 1.97316 0.94357 0.93713 0.92970 0.94392 0.93767 0.93663 0.89088 0.95625 0.87805 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 10.23 37.16 0.38 -2.63 15 2 C 0.14 2.96 6.39 -4.04 -0.03 2.93 15 3 N -0.60 -14.40 2.53 -173.24 -0.44 -14.84 15 4 C -0.25 -6.46 9.70 -15.06 -0.15 -6.61 15 5 H 0.08 1.95 7.94 -52.48 -0.42 1.54 15 6 C 0.00 -0.08 4.90 -17.43 -0.09 -0.17 15 7 N -0.90 -23.65 8.72 55.49 0.48 -23.17 15 8 Si 0.90 20.93 29.62 -169.99 -5.03 15.89 15 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 12 C 0.20 4.59 5.18 -4.04 -0.02 4.57 15 13 C -0.06 -1.40 4.30 -90.63 -0.39 -1.79 15 14 H 0.14 3.37 7.42 -51.93 -0.39 2.98 15 15 C -0.17 -3.20 10.22 -26.73 -0.27 -3.47 15 16 C 0.13 2.67 5.20 -26.73 -0.14 2.53 15 17 F -0.18 -3.54 16.47 2.25 0.04 -3.51 15 18 F -0.18 -3.68 17.60 2.25 0.04 -3.64 15 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.04 0.76 8.05 -51.93 -0.42 0.35 15 23 H 0.04 0.90 8.06 -51.93 -0.42 0.49 15 24 H 0.25 6.51 8.31 -40.82 -0.34 6.17 15 25 H 0.09 2.28 6.30 -51.93 -0.33 1.95 15 26 H 0.03 0.56 6.99 -51.93 -0.36 0.20 15 27 H 0.10 1.79 8.14 -51.93 -0.42 1.37 15 28 H 0.10 1.78 8.14 -51.92 -0.42 1.36 15 LS Contribution 246.18 15.07 3.71 3.71 Total: -1.00 -26.33 246.18 -5.48 -31.81 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -3.58 Total: -1.62 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.70 Total: -4.63 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.05 Total: -38.01 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 0.08 Total: -7.15 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -26.33 -5.48 -31.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691205621.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.547 kcal (2) G-P(sol) polarization free energy of solvation -26.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds