Wall clock time and date at job start Mon Mar 30 2020 02:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47347 * 2 1 4 4 C 1.36942 * 120.00222 * 272.59716 * 3 2 1 5 5 H 1.08005 * 119.99324 * 8.73235 * 4 3 2 6 6 C 1.38808 * 120.00427 * 188.73655 * 4 3 2 7 7 N 1.31624 * 119.99642 * 24.56458 * 6 4 3 8 8 Si 1.86797 * 120.00213 * 204.56662 * 6 4 3 9 9 H 1.48501 * 109.46730 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46868 * 119.99604 * 8 6 4 11 11 H 1.48495 * 109.47068 * 239.99772 * 8 6 4 12 12 C 1.46503 * 120.00063 * 92.58951 * 3 2 1 13 13 C 1.52994 * 109.47069 * 90.00442 * 12 3 2 14 14 H 1.09002 * 115.54811 * 29.32714 * 13 12 3 15 15 C 1.52997 * 117.50215 * 174.99897 * 13 12 3 16 16 C 1.52997 * 117.49895 * 243.62484 * 13 12 3 17 17 F 1.39900 * 117.49696 * 359.97438 * 16 13 12 18 18 F 1.39901 * 117.50447 * 145.02050 * 16 13 12 19 19 H 1.08998 * 109.47086 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47241 * 300.00033 * 1 2 3 21 21 H 1.08996 * 109.46899 * 60.00105 * 1 2 3 22 22 H 1.09005 * 109.47079 * 119.99904 * 2 1 3 23 23 H 1.08998 * 109.46905 * 239.99559 * 2 1 3 24 24 H 0.97002 * 119.99659 * 180.02562 * 7 6 4 25 25 H 1.09004 * 109.46881 * 210.00357 * 12 3 2 26 26 H 1.09000 * 109.47150 * 330.00246 * 12 3 2 27 27 H 1.09000 * 117.50374 * 214.98318 * 15 13 12 28 28 H 1.09007 * 117.49584 * 359.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1960 2.0446 -1.1847 5 1 1.8456 1.6056 -2.1072 6 6 2.8264 3.2812 -1.2000 7 7 3.6606 3.6065 -0.2353 8 14 2.4907 4.4836 -2.5895 9 1 1.5227 3.8821 -3.5416 10 1 1.9235 5.7379 -2.0325 11 1 3.7593 4.7865 -3.2994 12 6 2.3166 2.0527 1.2675 13 6 3.7790 1.8061 1.6434 14 1 4.4617 1.6616 0.8061 15 6 4.3210 2.5240 2.8810 16 6 4.0557 1.0178 2.9252 17 9 2.9520 0.5781 3.6640 18 9 5.1657 0.1664 2.9331 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 4.1009 4.4708 -0.2458 25 1 2.1446 3.1237 1.1604 26 1 1.6687 1.6569 2.0496 27 1 5.3604 2.8516 2.8581 28 1 3.6358 3.1724 3.4272 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691205621.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:14 Heat of formation + Delta-G solvation = -60.367395 kcal Electronic energy + Delta-G solvation = -13988.262499 eV Core-core repulsion = 11290.462664 eV Total energy + Delta-G solvation = -2697.799836 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.48263 -48.17927 -38.51079 -36.17859 -33.75146 -30.70064 -28.04684 -25.32842 -23.31839 -22.51238 -21.44472 -18.92793 -18.32268 -17.40465 -16.89085 -16.46090 -15.64989 -15.46509 -14.89926 -14.63413 -14.50728 -14.35176 -14.05593 -13.61765 -13.12970 -12.89386 -12.62084 -12.51655 -12.22428 -12.02806 -11.84571 -11.63360 -11.20738 -10.70529 -10.21689 -8.85636 -7.79960 -5.10886 1.50120 1.55510 1.62784 2.29142 2.54040 2.65193 3.30351 3.47765 3.76908 3.91943 4.08790 4.41300 4.66066 4.71506 4.77907 4.83119 5.01127 5.07814 5.20377 5.26180 5.45500 5.56749 5.67985 5.76309 6.34649 7.21367 7.92058 8.34415 9.23641 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.032210 B = 0.012976 C = 0.010112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.089582 B = 2157.390546 C = 2768.380755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 N -0.614 5.614 4 C -0.262 4.262 5 H 0.070 0.930 6 C -0.043 4.043 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.278 1.278 10 H -0.292 1.292 11 H -0.298 1.298 12 C 0.208 3.792 13 C -0.082 4.082 14 H 0.102 0.898 15 C -0.147 4.147 16 C 0.138 3.862 17 F -0.175 7.175 18 F -0.182 7.182 19 H 0.069 0.931 20 H 0.042 0.958 21 H 0.041 0.959 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.250 0.750 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.120 0.880 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 -2.666 4.846 5.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.012 3.988 3 N -0.336 5.336 4 C -0.391 4.391 5 H 0.088 0.912 6 C -0.238 4.238 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.219 1.219 11 H -0.226 1.226 12 C 0.081 3.919 13 C -0.104 4.104 14 H 0.120 0.880 15 C -0.185 4.185 16 C 0.101 3.899 17 F -0.156 7.156 18 F -0.163 7.163 19 H 0.087 0.913 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.138 0.862 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.270 -2.595 4.858 5.652 hybrid contribution 0.206 0.493 -0.611 0.812 sum -1.065 -2.103 4.247 4.857 Atomic orbital electron populations 1.22157 0.97380 1.00965 1.00809 1.20897 0.93831 0.84989 0.99065 1.44381 1.75930 1.10771 1.02500 1.19470 1.31849 1.00567 0.87220 0.91248 1.25253 0.98040 1.00321 1.00225 1.70250 1.28158 1.21762 1.35713 0.85444 0.77002 0.79751 0.79582 1.20296 1.21933 1.22572 1.20166 0.88924 0.97487 0.85293 1.24237 1.02574 0.94046 0.89522 0.87959 1.24195 1.04916 0.88743 1.00634 1.21151 0.76829 0.88066 1.03814 1.92901 1.52581 1.91348 1.78723 1.92913 1.52359 1.73769 1.97269 0.91252 0.93871 0.94015 0.93991 0.94025 0.94030 0.91470 0.94636 0.86178 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 10.23 71.98 0.74 -4.58 15 2 C 0.14 5.59 6.39 86.38 0.55 6.14 15 3 N -0.61 -29.45 2.53 -702.00 -1.78 -31.23 15 4 C -0.26 -13.68 9.70 84.03 0.82 -12.86 15 5 H 0.07 3.62 7.94 -2.91 -0.02 3.60 15 6 C -0.04 -2.23 4.90 84.86 0.42 -1.81 15 7 N -0.91 -47.81 8.72 21.65 0.19 -47.62 15 8 Si 0.95 43.07 29.62 68.60 2.03 45.10 15 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 10 H -0.29 -13.26 7.11 99.48 0.71 -12.55 15 11 H -0.30 -13.64 7.11 99.48 0.71 -12.93 15 12 C 0.21 9.44 5.18 86.38 0.45 9.89 15 13 C -0.08 -3.51 4.30 -10.80 -0.05 -3.56 15 14 H 0.10 5.14 7.42 -2.39 -0.02 5.13 15 15 C -0.15 -5.14 10.22 30.59 0.31 -4.82 15 16 C 0.14 5.31 5.20 30.59 0.16 5.47 15 17 F -0.17 -6.68 16.47 44.97 0.74 -5.94 15 18 F -0.18 -7.17 17.60 44.97 0.79 -6.38 15 19 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 20 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 21 H 0.04 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.04 1.64 8.05 -2.38 -0.02 1.62 15 23 H 0.04 1.68 8.06 -2.39 -0.02 1.66 15 24 H 0.25 12.82 8.31 -92.71 -0.77 12.05 15 25 H 0.07 3.36 6.30 -2.38 -0.02 3.34 15 26 H 0.04 1.51 6.99 -2.39 -0.02 1.50 15 27 H 0.12 3.83 8.14 -2.39 -0.02 3.81 15 28 H 0.12 3.88 8.14 -2.38 -0.02 3.86 15 Total: -1.00 -54.35 246.18 6.51 -47.84 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.14 Total: 4.35 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 3.39 Total: -6.13 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -1.59 Total: -78.85 kcal Atomic # 9 Polarization: -13.85 SS G_CDS: 1.53 Total: -12.32 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -54.35 6.51 -47.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691205621.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.524 kcal (2) G-P(sol) polarization free energy of solvation -54.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds