Wall clock time and date at job start Mon Mar 30 2020 02:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46785 * 120.07960 * 3 2 1 5 5 C 1.36939 * 119.99560 * 264.32064 * 4 3 2 6 6 H 1.08005 * 119.99512 * 196.89034 * 5 4 3 7 7 C 1.38808 * 119.99982 * 16.89228 * 5 4 3 8 8 N 1.31617 * 120.00243 * 22.20960 * 7 5 4 9 9 Si 1.86802 * 119.99918 * 202.20722 * 7 5 4 10 10 H 1.48508 * 109.46989 * 60.00211 * 9 7 5 11 11 H 1.48501 * 109.47133 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47452 * 300.00388 * 9 7 5 13 13 C 1.46497 * 120.00139 * 84.32536 * 4 3 2 14 14 C 1.52999 * 109.46887 * 269.99714 * 13 4 3 15 15 C 1.47207 * 115.56325 * 325.68857 * 14 13 4 16 16 N 3.81678 * 82.36796 * 112.09759 * 2 1 3 17 17 C 1.53002 * 117.49859 * 180.02562 * 14 13 4 18 18 C 1.53003 * 60.03173 * 252.49649 * 17 14 13 19 19 H 1.08995 * 109.47377 * 0.07460 * 3 2 1 20 20 H 1.08998 * 109.46858 * 240.07528 * 3 2 1 21 21 H 0.97004 * 120.00042 * 179.97438 * 8 7 5 22 22 H 1.09001 * 109.47180 * 150.00093 * 13 4 3 23 23 H 1.08996 * 109.47656 * 29.99799 * 13 4 3 24 24 H 1.08995 * 117.49599 * 359.97438 * 17 14 13 25 25 H 1.09004 * 117.49964 * 145.00133 * 17 14 13 26 26 H 1.09002 * 117.49750 * 107.49675 * 18 17 14 27 27 H 1.09000 * 117.50269 * 252.51983 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.6932 -1.1953 5 6 3.4351 -0.0240 -2.3115 6 1 4.0401 0.4305 -3.0821 7 6 3.0013 -1.3350 -2.4524 8 7 1.9470 -1.7546 -1.7856 9 14 3.9140 -2.5038 -3.5884 10 1 5.3212 -2.6384 -3.1333 11 1 3.2554 -3.8345 -3.5625 12 1 3.8908 -1.9674 -4.9729 13 6 3.2212 2.1528 -1.1963 14 6 1.9113 2.7766 -1.6822 15 6 1.1872 2.0125 -2.7111 16 7 0.6291 1.4231 -3.5051 17 6 1.8405 4.3032 -1.7558 18 6 1.0771 3.5546 -0.6614 19 1 2.9718 -1.0268 -0.0013 20 1 2.9711 0.5135 0.8907 21 1 1.6437 -2.6707 -1.8844 22 1 4.0327 2.4474 -1.8617 23 1 3.4359 2.4998 -0.1857 24 1 2.7269 4.8631 -1.4577 25 1 1.2577 4.7416 -2.5660 26 1 1.4615 3.6219 0.3564 27 1 -0.0078 3.5000 -0.7518 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691610721.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:36 Heat of formation + Delta-G solvation = 108.350617 kcal Electronic energy + Delta-G solvation = -13156.508273 eV Core-core repulsion = 10916.713785 eV Total energy + Delta-G solvation = -2239.794487 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.29368 -35.82809 -34.52853 -34.10542 -31.31367 -27.74504 -26.14188 -22.96130 -22.21777 -21.49321 -17.44256 -16.69207 -15.93649 -14.99559 -14.51669 -13.85167 -13.49808 -13.26153 -12.63298 -12.16380 -12.00403 -11.80508 -11.62497 -11.31217 -11.23959 -10.93155 -10.85647 -10.79603 -10.33595 -10.24992 -9.94176 -9.81886 -9.36173 -8.71987 -7.23840 -5.96053 -3.34463 3.35301 3.40502 3.43011 3.44326 3.85347 4.18338 4.41553 4.47833 4.53304 4.65379 4.96250 5.27611 5.28517 5.50190 5.69734 5.76729 5.81727 6.05120 6.21099 6.24138 6.31063 6.43806 6.60251 7.01128 7.66708 8.12044 8.72917 8.95119 9.24611 9.61067 10.03187 11.11951 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.034424 B = 0.013563 C = 0.012283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.186679 B = 2064.003138 C = 2279.081247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.246 3.754 3 C 0.257 3.743 4 N -0.577 5.577 5 C -0.271 4.271 6 H 0.078 0.922 7 C 0.014 3.986 8 N -0.891 5.891 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.183 3.817 14 C -0.058 4.058 15 C 0.257 3.743 16 N -0.430 5.430 17 C -0.159 4.159 18 C -0.153 4.153 19 H 0.112 0.888 20 H 0.060 0.940 21 H 0.259 0.741 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.107 0.893 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 9.492 4.805 11.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.073 4.073 3 C 0.127 3.873 4 N -0.296 5.296 5 C -0.400 4.400 6 H 0.096 0.904 7 C -0.187 4.187 8 N -0.534 5.534 9 Si 0.734 3.266 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.054 3.946 14 C -0.065 4.065 15 C -0.060 4.060 16 N -0.105 5.105 17 C -0.199 4.199 18 C -0.192 4.192 19 H 0.130 0.870 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.126 0.874 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.911 8.369 3.569 9.553 hybrid contribution 0.738 -0.684 -0.574 1.159 sum 3.649 7.685 2.995 9.019 Atomic orbital electron populations 1.80816 1.14454 1.11800 1.11373 1.30444 0.96316 0.90223 0.90280 1.18352 0.80540 1.00330 0.88081 1.44200 1.73762 0.99808 1.11876 1.19115 1.27116 0.94258 0.99468 0.90380 1.24852 0.95972 0.98928 0.98903 1.69910 1.21161 1.17339 1.44970 0.86329 0.79493 0.80263 0.80521 1.20689 1.21711 1.21026 1.20719 0.90829 0.84064 0.98963 1.19697 1.00123 0.90886 0.95770 1.27055 0.92856 0.93042 0.93084 1.81018 1.10378 1.07299 1.11780 1.23065 1.03040 0.92309 1.01436 1.23084 0.98763 1.02159 0.95175 0.87006 0.92220 0.93021 0.91288 0.91672 0.87419 0.88971 0.87637 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.83 18.54 42.15 0.78 -12.05 15 2 C 0.25 5.74 13.26 -20.76 -0.28 5.46 15 3 C 0.26 5.22 5.45 -6.83 -0.04 5.19 15 4 N -0.58 -12.18 2.05 -176.58 -0.36 -12.55 15 5 C -0.27 -6.65 8.54 -15.06 -0.13 -6.77 15 6 H 0.08 1.92 7.90 -52.48 -0.41 1.51 15 7 C 0.01 0.35 4.85 -17.43 -0.08 0.27 15 8 N -0.89 -24.55 9.49 55.49 0.53 -24.02 15 9 Si 0.90 21.23 29.61 -169.99 -5.03 16.20 15 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 15 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 13 C 0.18 3.01 5.87 -4.04 -0.02 2.99 15 14 C -0.06 -0.99 2.17 -157.25 -0.34 -1.33 15 15 C 0.26 5.78 13.29 -20.78 -0.28 5.50 15 16 N -0.43 -11.10 18.53 42.13 0.78 -10.32 15 17 C -0.16 -1.96 9.93 -26.73 -0.27 -2.23 15 18 C -0.15 -2.14 9.86 -26.69 -0.26 -2.41 15 19 H 0.11 2.48 6.43 -51.93 -0.33 2.15 15 20 H 0.06 0.94 7.97 -51.93 -0.41 0.53 15 21 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 22 H 0.07 1.07 8.02 -51.93 -0.42 0.66 15 23 H 0.07 0.85 7.71 -51.93 -0.40 0.45 15 24 H 0.11 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.11 1.23 8.05 -51.93 -0.42 0.82 15 27 H 0.09 1.40 8.14 -51.93 -0.42 0.97 15 LS Contribution 251.58 15.07 3.79 3.79 Total: -1.00 -32.05 251.58 -4.01 -36.05 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -2.80 Total: -3.78 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -1.69 Total: 6.67 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 1.73 Total: -58.93 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.05 -4.01 -36.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691610721.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.405 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds