Wall clock time and date at job start Mon Mar 30 2020 02:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46785 * 120.07960 * 3 2 1 5 5 C 1.36939 * 119.99560 * 264.32064 * 4 3 2 6 6 H 1.08005 * 119.99512 * 196.89034 * 5 4 3 7 7 C 1.38808 * 119.99982 * 16.89228 * 5 4 3 8 8 N 1.31617 * 120.00243 * 22.20960 * 7 5 4 9 9 Si 1.86802 * 119.99918 * 202.20722 * 7 5 4 10 10 H 1.48508 * 109.46989 * 60.00211 * 9 7 5 11 11 H 1.48501 * 109.47133 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47452 * 300.00388 * 9 7 5 13 13 C 1.46497 * 120.00139 * 84.32536 * 4 3 2 14 14 C 1.52999 * 109.46887 * 269.99714 * 13 4 3 15 15 C 1.47207 * 115.56325 * 325.68857 * 14 13 4 16 16 N 3.81678 * 82.36796 * 112.09759 * 2 1 3 17 17 C 1.53002 * 117.49859 * 180.02562 * 14 13 4 18 18 C 1.53003 * 60.03173 * 252.49649 * 17 14 13 19 19 H 1.08995 * 109.47377 * 0.07460 * 3 2 1 20 20 H 1.08998 * 109.46858 * 240.07528 * 3 2 1 21 21 H 0.97004 * 120.00042 * 179.97438 * 8 7 5 22 22 H 1.09001 * 109.47180 * 150.00093 * 13 4 3 23 23 H 1.08996 * 109.47656 * 29.99799 * 13 4 3 24 24 H 1.08995 * 117.49599 * 359.97438 * 17 14 13 25 25 H 1.09004 * 117.49964 * 145.00133 * 17 14 13 26 26 H 1.09002 * 117.49750 * 107.49675 * 18 17 14 27 27 H 1.09000 * 117.50269 * 252.51983 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.6932 -1.1953 5 6 3.4351 -0.0240 -2.3115 6 1 4.0401 0.4305 -3.0821 7 6 3.0013 -1.3350 -2.4524 8 7 1.9470 -1.7546 -1.7856 9 14 3.9140 -2.5038 -3.5884 10 1 5.3212 -2.6384 -3.1333 11 1 3.2554 -3.8345 -3.5625 12 1 3.8908 -1.9674 -4.9729 13 6 3.2212 2.1528 -1.1963 14 6 1.9113 2.7766 -1.6822 15 6 1.1872 2.0125 -2.7111 16 7 0.6291 1.4231 -3.5051 17 6 1.8405 4.3032 -1.7558 18 6 1.0771 3.5546 -0.6614 19 1 2.9718 -1.0268 -0.0013 20 1 2.9711 0.5135 0.8907 21 1 1.6437 -2.6707 -1.8844 22 1 4.0327 2.4474 -1.8617 23 1 3.4359 2.4998 -0.1857 24 1 2.7269 4.8631 -1.4577 25 1 1.2577 4.7416 -2.5660 26 1 1.4615 3.6219 0.3564 27 1 -0.0078 3.5000 -0.7518 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691610721.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:36 Heat of formation + Delta-G solvation = 88.043333 kcal Electronic energy + Delta-G solvation = -13157.388863 eV Core-core repulsion = 10916.713785 eV Total energy + Delta-G solvation = -2240.675077 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.63080 -37.49085 -36.25499 -35.90024 -33.11784 -29.26317 -27.83163 -24.50226 -23.23193 -23.06399 -19.25651 -18.13281 -17.59587 -16.66077 -15.81628 -15.63039 -15.11276 -14.69489 -14.29234 -13.91201 -13.63011 -13.44897 -13.31049 -13.11757 -12.72914 -12.62898 -12.50940 -12.25956 -12.03098 -11.94029 -11.65594 -11.29094 -10.59176 -10.56921 -9.00659 -7.91508 -5.25403 1.46540 1.49658 1.54272 1.97535 2.19322 2.42085 2.59643 2.69354 3.17655 3.27250 3.34506 3.69704 3.99123 4.10252 4.25666 4.46753 4.86625 4.95979 5.04720 5.10279 5.16045 5.26385 5.36354 5.37205 5.71100 6.28187 7.05168 7.10848 7.46877 7.83838 8.19846 9.13795 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.034424 B = 0.013563 C = 0.012283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.186679 B = 2064.003138 C = 2279.081247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C 0.262 3.738 3 C 0.253 3.747 4 N -0.588 5.588 5 C -0.249 4.249 6 H 0.076 0.924 7 C -0.038 4.038 8 N -0.919 5.919 9 Si 0.948 3.052 10 H -0.263 1.263 11 H -0.308 1.308 12 H -0.297 1.297 13 C 0.180 3.820 14 C -0.102 4.102 15 C 0.273 3.727 16 N -0.512 5.512 17 C -0.117 4.117 18 C -0.146 4.146 19 H 0.091 0.909 20 H 0.121 0.879 21 H 0.243 0.757 22 H 0.080 0.920 23 H 0.115 0.885 24 H 0.153 0.847 25 H 0.090 0.910 26 H 0.139 0.861 27 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.555 12.131 6.368 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.235 5.235 2 C -0.056 4.056 3 C 0.124 3.876 4 N -0.307 5.307 5 C -0.379 4.379 6 H 0.094 0.906 7 C -0.234 4.234 8 N -0.565 5.565 9 Si 0.778 3.222 10 H -0.188 1.188 11 H -0.235 1.235 12 H -0.225 1.225 13 C 0.054 3.946 14 C -0.108 4.108 15 C -0.043 4.043 16 N -0.188 5.188 17 C -0.156 4.156 18 C -0.184 4.184 19 H 0.109 0.891 20 H 0.138 0.862 21 H 0.052 0.948 22 H 0.098 0.902 23 H 0.133 0.867 24 H 0.171 0.829 25 H 0.109 0.891 26 H 0.157 0.843 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.023 11.054 5.137 13.183 hybrid contribution 0.129 -1.365 -1.059 1.732 sum 5.152 9.689 4.078 11.707 Atomic orbital electron populations 1.80819 1.16115 1.13481 1.13099 1.31169 0.96945 0.88730 0.88767 1.18682 0.78570 1.00324 0.90051 1.44395 1.73259 1.02098 1.10997 1.19286 1.24886 0.94002 0.99683 0.90645 1.25320 0.96958 1.00503 1.00651 1.70059 1.22886 1.16300 1.47251 0.85652 0.79534 0.78299 0.78691 1.18800 1.23527 1.22475 1.21075 0.90489 0.80893 1.02178 1.20059 1.00659 0.93562 0.96532 1.28308 0.91540 0.91829 0.92627 1.81019 1.12990 1.10003 1.14785 1.23277 1.03859 0.88504 0.99973 1.23228 0.97544 1.00793 0.96834 0.89085 0.86170 0.94780 0.90156 0.86667 0.82874 0.89129 0.84289 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -28.26 18.54 20.01 0.37 -27.89 15 2 C 0.26 11.94 13.26 89.44 1.19 13.12 15 3 C 0.25 9.64 5.45 84.57 0.46 10.11 15 4 N -0.59 -23.16 2.05 -712.56 -1.46 -24.62 15 5 C -0.25 -11.87 8.54 84.03 0.72 -11.16 15 6 H 0.08 3.61 7.90 -2.91 -0.02 3.58 15 7 C -0.04 -2.00 4.85 84.86 0.41 -1.58 15 8 N -0.92 -51.72 9.49 21.65 0.21 -51.51 15 9 Si 0.95 44.28 29.61 68.60 2.03 46.31 15 10 H -0.26 -11.33 7.11 99.48 0.71 -10.63 15 11 H -0.31 -15.12 7.11 99.48 0.71 -14.42 15 12 H -0.30 -14.37 7.11 99.48 0.71 -13.66 15 13 C 0.18 5.05 5.87 86.38 0.51 5.55 15 14 C -0.10 -3.09 2.17 -53.96 -0.12 -3.20 15 15 C 0.27 12.09 13.29 89.45 1.19 13.28 15 16 N -0.51 -27.05 18.53 20.00 0.37 -26.68 15 17 C -0.12 -2.27 9.93 30.60 0.30 -1.97 15 18 C -0.15 -3.45 9.86 30.62 0.30 -3.15 15 19 H 0.09 3.93 6.43 -2.39 -0.02 3.92 15 20 H 0.12 3.14 7.97 -2.39 -0.02 3.12 15 21 H 0.24 14.11 8.31 -92.71 -0.77 13.34 15 22 H 0.08 2.08 8.02 -2.39 -0.02 2.06 15 23 H 0.12 2.12 7.71 -2.39 -0.02 2.10 15 24 H 0.15 1.67 8.14 -2.39 -0.02 1.65 15 25 H 0.09 1.84 8.14 -2.38 -0.02 1.82 15 26 H 0.14 2.38 8.05 -2.39 -0.02 2.36 15 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 Total: -1.00 -73.88 251.58 7.66 -66.22 By element: Atomic # 1 Polarization: -4.02 SS G_CDS: 1.18 Total: -2.84 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 4.96 Total: 21.00 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -0.51 Total: -130.69 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -73.88 7.66 -66.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691610721.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.266 kcal (2) G-P(sol) polarization free energy of solvation -73.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds