Wall clock time and date at job start Mon Mar 30 2020 02:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47560 * 2 1 4 4 C 1.53004 * 109.46959 * 239.99799 * 2 1 3 5 5 C 1.50697 * 109.46948 * 65.00240 * 4 2 1 6 6 H 1.08001 * 120.00108 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00023 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99871 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00132 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46749 * 90.00114 * 9 7 5 11 11 H 1.48494 * 109.47321 * 210.00343 * 9 7 5 12 12 H 1.48505 * 109.47327 * 330.00775 * 9 7 5 13 13 N 1.46506 * 109.47206 * 120.00193 * 2 1 3 14 14 C 1.36245 * 126.49318 * 60.01745 * 13 2 1 15 15 C 1.35385 * 107.07179 * 179.97438 * 14 13 2 16 16 N 1.33276 * 108.40965 * 0.02562 * 15 14 13 17 17 C 1.31664 * 109.22007 * 359.97438 * 16 15 14 18 18 C 1.43198 * 125.85564 * 179.97438 * 17 16 15 19 19 N 3.84998 * 124.33232 * 44.99854 * 2 1 3 20 20 H 1.08998 * 109.47175 * 59.99875 * 1 2 3 21 21 H 1.08997 * 109.47299 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46860 * 299.99950 * 1 2 3 23 23 H 1.08998 * 109.47127 * 185.00082 * 4 2 1 24 24 H 1.08995 * 109.47068 * 305.00208 * 4 2 1 25 25 H 0.97002 * 120.00570 * 179.97438 * 8 7 5 26 26 H 1.07996 * 126.46638 * 0.23826 * 14 13 2 27 27 H 1.07997 * 125.79234 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9932 -0.4018 -3.7283 8 7 2.6762 -1.5188 -3.8511 9 14 1.4984 0.5626 -5.2497 10 1 2.5632 1.5429 -5.5822 11 1 1.3120 -0.3714 -6.3889 12 1 0.2267 1.2832 -4.9872 13 7 2.0183 -0.6907 1.1962 14 6 1.7724 -1.9855 1.5414 15 6 2.4106 -2.2124 2.7136 16 7 3.0304 -1.0907 3.0794 17 6 2.8072 -0.1582 2.1772 18 6 3.3048 1.1840 2.2173 19 7 3.7013 2.2481 2.2480 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.1262 -0.7996 -1.2056 24 1 1.6053 -1.7198 -1.2951 25 1 2.9235 -1.8418 -4.7317 26 1 1.1833 -2.6979 0.9829 27 1 2.4164 -3.1442 3.2596 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695862455.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:27 Heat of formation + Delta-G solvation = 65.277594 kcal Electronic energy + Delta-G solvation = -12624.426448 eV Core-core repulsion = 10382.764174 eV Total energy + Delta-G solvation = -2241.662274 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.21164 -37.75502 -37.40904 -34.71322 -31.92669 -31.00014 -28.98990 -25.94086 -24.48676 -23.32529 -21.52448 -19.38511 -18.39344 -17.06341 -16.75232 -16.40900 -15.65054 -15.10328 -14.77684 -14.61862 -14.33433 -14.10482 -13.94228 -13.73776 -13.20686 -12.90893 -12.76529 -12.39874 -12.13133 -11.83751 -11.46126 -11.17127 -10.67016 -10.59245 -9.49301 -8.25683 -6.36589 0.27190 1.04971 1.41512 1.43124 1.52603 1.67803 1.75741 2.37999 2.41508 2.61750 3.10394 3.70619 3.92128 4.12526 4.32550 4.47395 4.54743 4.85164 4.88766 5.16471 5.24610 5.31467 5.48673 5.65978 5.69890 5.87279 6.07872 6.18855 6.76579 6.82470 7.33388 8.86060 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.039994 B = 0.008700 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.936395 B = 3217.613502 C = 3481.027335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.130 3.870 3 H 0.080 0.920 4 C 0.032 3.968 5 C -0.537 4.537 6 H 0.070 0.930 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.960 3.040 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.258 1.258 13 N -0.411 5.411 14 C 0.003 3.997 15 C -0.026 4.026 16 N -0.455 5.455 17 C 0.207 3.793 18 C 0.315 3.685 19 N -0.412 5.412 20 H 0.081 0.919 21 H 0.073 0.927 22 H 0.066 0.934 23 H -0.013 1.013 24 H 0.021 0.979 25 H 0.265 0.735 26 H 0.210 0.790 27 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.639 -1.965 7.735 9.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.029 3.971 3 H 0.099 0.901 4 C -0.006 4.006 5 C -0.575 4.575 6 H 0.088 0.912 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.785 3.215 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.182 1.182 13 N -0.092 5.092 14 C -0.137 4.137 15 C -0.179 4.179 16 N -0.177 5.177 17 C -0.049 4.049 18 C -0.002 4.002 19 N -0.092 5.092 20 H 0.100 0.900 21 H 0.092 0.908 22 H 0.085 0.915 23 H 0.006 0.994 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.226 0.774 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.544 -0.201 8.219 9.393 hybrid contribution -0.358 -0.185 -1.764 1.809 sum -4.902 -0.386 6.455 8.114 Atomic orbital electron populations 1.21980 0.90727 1.03887 1.03012 1.21898 0.97440 0.95920 0.81847 0.90144 1.19246 0.94780 0.96032 0.90538 1.21416 1.35842 1.09116 0.91171 0.91170 1.25830 0.94816 0.95859 1.02472 1.70066 1.39315 1.22548 1.24715 0.85515 0.79092 0.78313 0.78586 1.20629 1.20906 1.18166 1.46075 1.34467 1.11281 1.17370 1.23620 1.05021 0.85581 0.99460 1.23028 1.00317 0.97985 0.96598 1.70224 1.21563 1.00382 1.25482 1.17169 1.05388 0.90092 0.92203 1.23487 0.92918 0.90241 0.93569 1.81237 1.09426 1.11053 1.07456 0.90001 0.90769 0.91544 0.99422 0.96059 0.92636 0.77361 0.76521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.06 71.98 0.65 -3.42 15 2 C 0.13 4.68 2.96 44.99 0.13 4.81 15 3 H 0.08 3.04 7.36 -2.39 -0.02 3.02 15 4 C 0.03 1.46 4.45 29.85 0.13 1.59 15 5 C -0.54 -27.02 8.41 25.60 0.22 -26.81 15 6 H 0.07 3.33 7.06 -2.91 -0.02 3.31 15 7 C 0.01 0.49 5.46 84.66 0.46 0.96 15 8 N -0.93 -52.38 13.29 21.45 0.28 -52.10 15 9 Si 0.96 41.15 29.54 68.60 2.03 43.18 15 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 12 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 13 N -0.41 -13.44 2.64 -497.94 -1.31 -14.76 15 14 C 0.00 0.08 10.69 83.35 0.89 0.97 15 15 C -0.03 -0.65 11.84 83.81 0.99 0.34 15 16 N -0.45 -14.62 11.27 -193.29 -2.18 -16.80 15 17 C 0.21 7.07 7.66 135.09 1.03 8.11 15 18 C 0.31 11.23 15.05 88.33 1.33 12.56 15 19 N -0.41 -15.28 18.54 19.00 0.35 -14.93 15 20 H 0.08 2.55 6.95 -2.39 -0.02 2.53 15 21 H 0.07 1.99 7.95 -2.39 -0.02 1.97 15 22 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 23 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 15 24 H 0.02 1.00 8.09 -2.39 -0.02 0.98 15 25 H 0.26 14.20 8.31 -92.71 -0.77 13.43 15 26 H 0.21 4.34 8.06 -2.91 -0.02 4.32 15 27 H 0.22 3.53 8.06 -2.91 -0.02 3.51 15 Total: -1.00 -60.71 250.28 6.19 -54.52 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.17 Total: 1.77 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.84 Total: -0.89 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -2.85 Total: -98.58 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -60.71 6.19 -54.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695862455.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.800 kcal (2) G-P(sol) polarization free energy of solvation -60.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds