Wall clock time and date at job start Mon Mar 30 2020 02:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.53004 * 109.47252 * 119.99898 * 2 1 3 5 5 C 1.50699 * 109.46847 * 295.00216 * 4 2 1 6 6 H 1.08002 * 120.00511 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99573 * 180.27665 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 N 1.46501 * 109.47195 * 240.00225 * 2 1 3 14 14 C 1.34432 * 125.76970 * 324.99399 * 13 2 1 15 15 C 1.37999 * 107.40455 * 179.97438 * 14 13 2 16 16 C 1.43204 * 126.40644 * 180.02562 * 15 14 13 17 17 N 6.04837 * 92.22118 * 228.31415 * 2 1 3 18 18 C 1.41273 * 107.19491 * 0.02562 * 15 14 13 19 19 N 1.30487 * 108.04931 * 359.75342 * 18 15 14 20 20 H 1.09001 * 109.47203 * 60.00346 * 1 2 3 21 21 H 1.08998 * 109.46866 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47348 * 299.99780 * 1 2 3 23 23 H 1.08992 * 109.47264 * 175.00390 * 4 2 1 24 24 H 1.09005 * 109.46510 * 54.99977 * 4 2 1 25 25 H 0.97004 * 119.99485 * 179.72881 * 8 7 5 26 26 H 1.08002 * 126.29511 * 0.02562 * 14 13 2 27 27 H 1.07998 * 125.97918 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 1.6397 0.2742 4.7997 9 14 2.9615 -1.9895 3.9029 10 1 4.4152 -1.6870 3.8788 11 1 2.6132 -2.6432 5.1900 12 1 2.6267 -2.9002 2.7788 13 7 2.0183 -0.6906 -1.1962 14 6 1.4380 -1.7518 -1.7829 15 6 2.2100 -2.0934 -2.8745 16 6 1.9616 -3.1675 -3.7885 17 7 1.7644 -4.0194 -4.5135 18 6 3.2913 -1.1854 -2.9219 19 7 3.1651 -0.3540 -1.9241 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 3.1263 -0.7994 1.2057 24 1 1.6053 -1.7198 1.2951 25 1 1.8832 -0.0510 5.6805 26 1 0.5334 -2.2455 -1.4598 27 1 4.0815 -1.1777 -3.6580 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695870539.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:25 Heat of formation + Delta-G solvation = 75.067287 kcal Electronic energy + Delta-G solvation = -12435.715478 eV Core-core repulsion = 10194.477717 eV Total energy + Delta-G solvation = -2241.237761 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.31792 -37.64248 -36.92648 -34.52729 -31.66854 -31.36928 -29.27106 -25.87756 -23.84143 -22.85552 -20.84250 -19.73856 -18.82405 -16.79179 -16.64799 -15.92616 -15.63474 -15.18511 -14.71444 -14.55182 -14.30704 -14.07549 -13.75413 -13.26263 -13.15590 -12.95360 -12.67074 -12.11386 -12.01539 -11.82042 -11.63927 -11.42970 -10.78706 -10.52270 -9.58532 -8.30005 -6.34208 0.59145 1.28282 1.35333 1.38498 1.43026 1.46542 1.74857 2.33807 2.65076 3.05829 3.16219 3.77222 3.89336 4.08441 4.14523 4.37806 4.53398 4.71096 4.87096 4.94385 5.14789 5.24551 5.35521 5.50704 5.55309 5.95651 6.22811 6.64203 6.69385 6.73099 7.30320 8.85136 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.042922 B = 0.008079 C = 0.007563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.184020 B = 3464.975159 C = 3701.290661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.168 3.832 3 H 0.092 0.908 4 C -0.014 4.014 5 C -0.519 4.519 6 H 0.054 0.946 7 C 0.017 3.983 8 N -0.942 5.942 9 Si 0.936 3.064 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.248 1.248 13 N -0.346 5.346 14 C 0.134 3.866 15 C -0.214 4.214 16 C 0.325 3.675 17 N -0.485 5.485 18 C 0.102 3.898 19 N -0.328 5.328 20 H 0.075 0.925 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.011 0.989 24 H 0.032 0.968 25 H 0.267 0.733 26 H 0.213 0.787 27 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 -3.399 -11.988 12.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.068 3.932 3 H 0.110 0.890 4 C -0.052 4.052 5 C -0.558 4.558 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.582 5.582 9 Si 0.760 3.240 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.172 1.172 13 N -0.122 5.122 14 C -0.022 4.022 15 C -0.231 4.231 16 C 0.011 3.989 17 N -0.163 5.163 18 C -0.087 4.087 19 N -0.146 5.146 20 H 0.094 0.906 21 H 0.096 0.904 22 H 0.097 0.903 23 H 0.030 0.970 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.230 0.770 27 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -0.174 -3.562 -12.164 12.676 hybrid contribution 0.277 -0.757 0.607 1.009 sum 0.103 -4.318 -11.556 12.337 Atomic orbital electron populations 1.22072 0.90714 1.04130 1.03550 1.21456 0.96264 0.96267 0.79255 0.88969 1.19879 0.96306 0.96737 0.92314 1.21151 1.35335 1.09243 0.90045 0.92733 1.25757 0.96557 1.00166 0.95682 1.70015 1.48262 1.41188 0.98771 0.85882 0.79209 0.80669 0.78202 1.20139 1.21059 1.17196 1.49132 1.18230 1.22956 1.21850 1.23410 0.98729 0.88725 0.91330 1.16101 1.03810 1.02087 1.01089 1.24482 0.91893 0.91047 0.91444 1.81268 1.10204 1.12696 1.12161 1.24501 0.97618 0.90399 0.96179 1.77292 1.03950 1.25195 1.08210 0.90595 0.90376 0.90330 0.97047 0.94932 0.92423 0.77032 0.76107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 8.64 71.98 0.62 -3.31 15 2 C 0.17 5.50 3.33 44.99 0.15 5.65 15 3 H 0.09 3.24 8.14 -2.39 -0.02 3.22 15 4 C -0.01 -0.58 3.84 29.85 0.11 -0.46 15 5 C -0.52 -26.43 8.96 25.60 0.23 -26.20 15 6 H 0.05 2.98 7.30 -2.91 -0.02 2.96 15 7 C 0.02 0.90 5.47 84.66 0.46 1.36 15 8 N -0.94 -55.30 13.96 21.45 0.30 -55.00 15 9 Si 0.94 41.82 27.47 68.60 1.88 43.71 15 10 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 12 H -0.25 -10.26 6.54 99.48 0.65 -9.61 15 13 N -0.35 -10.05 3.50 -325.65 -1.14 -11.19 15 14 C 0.13 3.12 10.58 84.24 0.89 4.02 15 15 C -0.21 -4.94 5.96 -21.34 -0.13 -5.07 15 16 C 0.33 8.03 15.82 88.33 1.40 9.43 15 17 N -0.49 -13.98 18.54 19.00 0.35 -13.63 15 18 C 0.10 2.32 12.00 85.64 1.03 3.35 15 19 N -0.33 -9.71 12.50 -56.27 -0.70 -10.41 15 20 H 0.08 1.66 8.14 -2.39 -0.02 1.64 15 21 H 0.08 1.79 7.13 -2.39 -0.02 1.77 15 22 H 0.08 2.46 6.95 -2.39 -0.02 2.44 15 23 H 0.01 0.49 7.57 -2.39 -0.02 0.47 15 24 H 0.03 1.29 7.20 -2.38 -0.02 1.28 15 25 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 26 H 0.21 3.54 7.24 -2.91 -0.02 3.52 15 27 H 0.22 3.29 8.06 -2.91 -0.02 3.27 15 Total: -1.00 -62.85 247.35 6.58 -56.27 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 1.12 Total: 1.49 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.77 Total: -11.23 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -1.19 Total: -90.23 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.88 Total: 43.71 kcal Total: -62.85 6.58 -56.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695870539.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.340 kcal (2) G-P(sol) polarization free energy of solvation -62.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds