Wall clock time and date at job start Mon Mar 30 2020 02:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47908 * 2 1 4 4 C 1.50702 * 109.46911 * 239.99309 * 2 1 3 5 5 H 1.07999 * 120.00338 * 240.35419 * 4 2 1 6 6 C 1.37877 * 119.99781 * 60.36411 * 4 2 1 7 7 N 1.31520 * 119.99665 * 203.26812 * 6 4 2 8 8 Si 1.86801 * 120.00193 * 23.26423 * 6 4 2 9 9 H 1.48495 * 109.46715 * 95.27992 * 8 6 4 10 10 H 1.48500 * 109.47093 * 215.28247 * 8 6 4 11 11 H 1.48498 * 109.46748 * 335.27908 * 8 6 4 12 12 N 1.46904 * 109.46818 * 119.99883 * 2 1 3 13 13 C 1.46896 * 111.00015 * 283.86602 * 12 2 1 14 14 C 1.53002 * 115.55105 * 293.69278 * 13 12 2 15 15 F 1.39908 * 109.46710 * 306.29926 * 14 13 12 16 16 F 1.39893 * 109.47268 * 66.29635 * 14 13 12 17 17 C 1.52999 * 117.50279 * 148.02099 * 13 12 2 18 18 C 1.53003 * 117.49910 * 79.35911 * 13 12 2 19 19 H 1.08995 * 109.47935 * 187.38219 * 1 2 3 20 20 H 1.09008 * 109.46957 * 67.37414 * 1 2 3 21 21 H 1.09000 * 109.47103 * 307.38454 * 1 2 3 22 22 H 0.97000 * 119.99383 * 180.02562 * 7 6 4 23 23 H 1.00899 * 110.99938 * 159.91232 * 12 2 1 24 24 H 1.09000 * 109.47405 * 186.30667 * 14 13 12 25 25 H 1.09002 * 117.49690 * 0.02562 * 17 13 12 26 26 H 1.08993 * 117.50314 * 145.02335 * 17 13 12 27 27 H 1.09002 * 117.49932 * 214.97943 * 18 13 12 28 28 H 1.08996 * 117.49532 * 359.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7106 -1.2304 5 1 2.6484 -1.5920 -1.1313 6 6 1.7053 -0.2353 -2.4827 7 7 1.7266 -1.0444 -3.5193 8 14 1.2320 1.5578 -2.7070 9 1 2.4271 2.3374 -3.1184 10 1 0.1854 1.6662 -3.7548 11 1 0.7073 2.0952 -1.4259 12 7 2.0196 -0.6925 1.1995 13 6 1.8851 0.1576 2.3899 14 6 2.7643 1.4097 2.4093 15 9 4.0987 1.0458 2.1987 16 9 2.3539 2.2835 1.3969 17 6 1.6140 -0.5359 3.7264 18 6 0.5013 0.2561 3.0351 19 1 -0.3635 -1.0190 0.1320 20 1 -0.3633 0.3954 -0.9486 21 1 -0.3633 0.6240 0.8166 22 1 1.4969 -0.7099 -4.4004 23 1 2.9742 -0.9957 1.0776 24 1 2.6710 1.9043 3.3762 25 1 1.5358 -1.6231 3.7225 26 1 2.0615 -0.1000 4.6196 27 1 0.2174 1.2127 3.4738 28 1 -0.3094 -0.3096 2.5760 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700179078.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:46 Heat of formation + Delta-G solvation = -72.381178 kcal Electronic energy + Delta-G solvation = -14174.118269 eV Core-core repulsion = 11475.797477 eV Total energy + Delta-G solvation = -2698.320792 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.61731 -46.62520 -37.94743 -34.33618 -31.76668 -28.66272 -26.39106 -25.05377 -22.25131 -20.64541 -19.47567 -17.32845 -16.79119 -16.57751 -16.40684 -14.97604 -14.56831 -13.79024 -13.42572 -13.36541 -12.97621 -12.70227 -12.32200 -12.04325 -11.54212 -11.39273 -11.28094 -10.93233 -10.56780 -10.40430 -10.22060 -9.81607 -9.48256 -9.13740 -8.33958 -7.55288 -6.12276 -3.99853 3.32406 3.41918 3.49484 3.76319 3.98827 4.38406 4.46633 4.60681 4.88406 4.92650 5.20986 5.49833 5.52086 5.71190 5.75664 6.05914 6.32460 6.51907 6.74000 6.77658 6.99370 7.44884 7.69358 7.91470 8.23756 8.61913 9.00305 9.57687 11.00744 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.039500 B = 0.012757 C = 0.011916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.683949 B = 2194.362938 C = 2349.119864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.173 3.827 3 H 0.022 0.978 4 C -0.529 4.529 5 H 0.075 0.925 6 C 0.083 3.917 7 N -0.882 5.882 8 Si 0.858 3.142 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.255 1.255 12 N -0.631 5.631 13 C -0.023 4.023 14 C 0.270 3.730 15 F -0.203 7.203 16 F -0.195 7.195 17 C -0.149 4.149 18 C -0.146 4.146 19 H 0.049 0.951 20 H 0.042 0.958 21 H 0.024 0.976 22 H 0.263 0.737 23 H 0.346 0.654 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 4.917 13.719 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.065 3.935 3 H 0.039 0.961 4 C -0.567 4.567 5 H 0.093 0.907 6 C -0.120 4.120 7 N -0.519 5.519 8 Si 0.684 3.316 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.179 1.179 12 N -0.261 5.261 13 C -0.118 4.118 14 C 0.214 3.786 15 F -0.184 7.184 16 F -0.176 7.176 17 C -0.186 4.186 18 C -0.183 4.183 19 H 0.068 0.932 20 H 0.061 0.939 21 H 0.043 0.957 22 H 0.073 0.927 23 H 0.166 0.834 24 H 0.117 0.883 25 H 0.127 0.873 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.491 4.548 13.556 14.377 hybrid contribution 0.602 1.648 -0.670 1.878 sum -0.889 6.196 12.886 14.326 Atomic orbital electron populations 1.22081 0.98238 0.99917 0.98509 1.19750 0.92322 0.94173 0.87266 0.96087 1.20881 1.33804 1.13419 0.88556 0.90716 1.24791 0.94239 0.97143 0.95875 1.70079 1.47227 1.34283 1.00270 0.87191 0.78422 0.87413 0.78578 1.20751 1.21322 1.17879 1.60511 1.27241 1.36812 1.01582 1.22460 0.99758 0.94412 0.95161 1.22068 0.77628 0.89468 0.89486 1.92962 1.36722 1.92617 1.96146 1.92955 1.90164 1.70822 1.63702 1.23075 1.01907 1.00769 0.92878 1.23094 0.91960 1.01721 1.01553 0.93153 0.93939 0.95745 0.92698 0.83381 0.88268 0.87328 0.88861 0.88883 0.86930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 7.90 37.16 0.29 -2.67 15 2 C 0.17 4.22 2.04 -68.86 -0.14 4.08 15 3 H 0.02 0.55 3.82 -51.93 -0.20 0.35 15 4 C -0.53 -15.21 9.03 -34.44 -0.31 -15.52 15 5 H 0.07 2.31 8.00 -52.49 -0.42 1.89 15 6 C 0.08 2.44 5.17 -17.82 -0.09 2.35 15 7 N -0.88 -27.21 13.96 55.43 0.77 -26.44 15 8 Si 0.86 22.00 25.84 -169.99 -4.39 17.61 15 9 H -0.28 -7.22 7.11 56.52 0.40 -6.82 15 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 15 11 H -0.25 -6.33 5.86 56.52 0.33 -6.00 15 12 N -0.63 -13.17 6.39 -94.25 -0.60 -13.77 15 13 C -0.02 -0.38 1.86 -131.60 -0.25 -0.63 15 14 C 0.27 4.34 5.14 37.16 0.19 4.53 15 15 F -0.20 -3.59 17.09 2.25 0.04 -3.55 15 16 F -0.20 -3.81 14.72 2.25 0.03 -3.77 15 17 C -0.15 -1.86 10.15 -26.69 -0.27 -2.13 15 18 C -0.15 -2.01 8.50 -26.69 -0.23 -2.24 15 19 H 0.05 1.14 8.14 -51.93 -0.42 0.72 15 20 H 0.04 1.01 5.25 -51.92 -0.27 0.74 15 21 H 0.02 0.48 5.98 -51.93 -0.31 0.17 15 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 23 H 0.35 7.40 8.29 -39.29 -0.33 7.07 15 24 H 0.10 1.15 8.08 -51.93 -0.42 0.73 15 25 H 0.11 1.38 8.14 -51.93 -0.42 0.96 15 26 H 0.09 0.91 8.14 -51.93 -0.42 0.49 15 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 28 H 0.11 1.68 6.95 -51.93 -0.36 1.32 15 LS Contribution 235.12 15.07 3.54 3.54 Total: -1.00 -31.31 235.12 -4.61 -35.93 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -3.20 Total: 2.69 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.80 Total: -12.24 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.17 Total: -40.21 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 0.07 Total: -7.32 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.39 Total: 17.61 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.31 -4.61 -35.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700179078.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.453 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds