Wall clock time and date at job start Mon Mar 30 2020 02:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47908 * 2 1 4 4 C 1.50702 * 109.46911 * 239.99309 * 2 1 3 5 5 H 1.07999 * 120.00338 * 240.35419 * 4 2 1 6 6 C 1.37877 * 119.99781 * 60.36411 * 4 2 1 7 7 N 1.31520 * 119.99665 * 203.26812 * 6 4 2 8 8 Si 1.86801 * 120.00193 * 23.26423 * 6 4 2 9 9 H 1.48495 * 109.46715 * 95.27992 * 8 6 4 10 10 H 1.48500 * 109.47093 * 215.28247 * 8 6 4 11 11 H 1.48498 * 109.46748 * 335.27908 * 8 6 4 12 12 N 1.46904 * 109.46818 * 119.99883 * 2 1 3 13 13 C 1.46896 * 111.00015 * 283.86602 * 12 2 1 14 14 C 1.53002 * 115.55105 * 293.69278 * 13 12 2 15 15 F 1.39908 * 109.46710 * 306.29926 * 14 13 12 16 16 F 1.39893 * 109.47268 * 66.29635 * 14 13 12 17 17 C 1.52999 * 117.50279 * 148.02099 * 13 12 2 18 18 C 1.53003 * 117.49910 * 79.35911 * 13 12 2 19 19 H 1.08995 * 109.47935 * 187.38219 * 1 2 3 20 20 H 1.09008 * 109.46957 * 67.37414 * 1 2 3 21 21 H 1.09000 * 109.47103 * 307.38454 * 1 2 3 22 22 H 0.97000 * 119.99383 * 180.02562 * 7 6 4 23 23 H 1.00899 * 110.99938 * 159.91232 * 12 2 1 24 24 H 1.09000 * 109.47405 * 186.30667 * 14 13 12 25 25 H 1.09002 * 117.49690 * 0.02562 * 17 13 12 26 26 H 1.08993 * 117.50314 * 145.02335 * 17 13 12 27 27 H 1.09002 * 117.49932 * 214.97943 * 18 13 12 28 28 H 1.08996 * 117.49532 * 359.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7106 -1.2304 5 1 2.6484 -1.5920 -1.1313 6 6 1.7053 -0.2353 -2.4827 7 7 1.7266 -1.0444 -3.5193 8 14 1.2320 1.5578 -2.7070 9 1 2.4271 2.3374 -3.1184 10 1 0.1854 1.6662 -3.7548 11 1 0.7073 2.0952 -1.4259 12 7 2.0196 -0.6925 1.1995 13 6 1.8851 0.1576 2.3899 14 6 2.7643 1.4097 2.4093 15 9 4.0987 1.0458 2.1987 16 9 2.3539 2.2835 1.3969 17 6 1.6140 -0.5359 3.7264 18 6 0.5013 0.2561 3.0351 19 1 -0.3635 -1.0190 0.1320 20 1 -0.3633 0.3954 -0.9486 21 1 -0.3633 0.6240 0.8166 22 1 1.4969 -0.7099 -4.4004 23 1 2.9742 -0.9957 1.0776 24 1 2.6710 1.9043 3.3762 25 1 1.5358 -1.6231 3.7225 26 1 2.0615 -0.1000 4.6196 27 1 0.2174 1.2127 3.4738 28 1 -0.3094 -0.3096 2.5760 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700179078.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:46 Heat of formation + Delta-G solvation = -95.360985 kcal Electronic energy + Delta-G solvation = -14175.114749 eV Core-core repulsion = 11475.797477 eV Total energy + Delta-G solvation = -2699.317271 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.91251 -47.94540 -39.25350 -36.12559 -33.82262 -30.33930 -27.62436 -27.17107 -23.28212 -22.37736 -20.95960 -18.95060 -18.29375 -18.08650 -17.73706 -16.89441 -15.92552 -15.48134 -15.04435 -14.71063 -14.56716 -14.31183 -14.02452 -13.64069 -13.16183 -13.02786 -12.79224 -12.39550 -12.28911 -12.16034 -11.79395 -11.49109 -11.09756 -10.95819 -10.51453 -9.19113 -8.38950 -6.29989 1.28094 1.33658 1.45574 2.31458 2.66187 2.84975 2.94163 3.21618 3.34647 3.73446 3.84730 4.29056 4.36177 4.52800 4.70854 4.79020 4.86737 4.92809 5.05130 5.18827 5.33967 5.51097 5.73946 5.96513 6.40664 6.62788 6.77243 7.30915 8.78338 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.039500 B = 0.012757 C = 0.011916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.683949 B = 2194.362938 C = 2349.119864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.179 3.821 3 H 0.016 0.984 4 C -0.538 4.538 5 H 0.033 0.967 6 C 0.030 3.970 7 N -0.929 5.929 8 Si 0.922 3.078 9 H -0.281 1.281 10 H -0.279 1.279 11 H -0.239 1.239 12 N -0.640 5.640 13 C -0.065 4.065 14 C 0.261 3.739 15 F -0.218 7.218 16 F -0.218 7.218 17 C -0.117 4.117 18 C -0.140 4.140 19 H 0.042 0.958 20 H 0.028 0.972 21 H 0.056 0.944 22 H 0.267 0.733 23 H 0.336 0.664 24 H 0.158 0.842 25 H 0.103 0.897 26 H 0.133 0.867 27 H 0.125 0.875 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 6.682 16.154 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.070 3.930 3 H 0.033 0.967 4 C -0.576 4.576 5 H 0.052 0.948 6 C -0.170 4.170 7 N -0.567 5.567 8 Si 0.745 3.255 9 H -0.207 1.207 10 H -0.204 1.204 11 H -0.162 1.162 12 N -0.269 5.269 13 C -0.159 4.159 14 C 0.206 3.794 15 F -0.200 7.200 16 F -0.200 7.200 17 C -0.154 4.154 18 C -0.177 4.177 19 H 0.061 0.939 20 H 0.047 0.953 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.154 0.846 24 H 0.175 0.825 25 H 0.122 0.878 26 H 0.151 0.849 27 H 0.143 0.857 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.374 6.316 16.021 17.384 hybrid contribution 0.917 0.986 -1.353 1.908 sum -1.457 7.302 14.668 16.450 Atomic orbital electron populations 1.21969 0.96965 1.00130 0.99032 1.19544 0.93140 0.93275 0.87040 0.96689 1.21227 1.33031 1.12384 0.90944 0.94827 1.25607 0.94583 1.01248 0.95539 1.70186 1.49222 1.36372 1.00966 0.86172 0.78281 0.81724 0.79287 1.20688 1.20410 1.16190 1.60362 1.26493 1.38110 1.01977 1.22731 1.02610 0.95470 0.95074 1.22621 0.76526 0.89317 0.90959 1.92931 1.37910 1.92800 1.96335 1.92898 1.90362 1.71514 1.65211 1.23221 0.99817 1.00621 0.91771 1.23241 0.90429 1.03329 1.00715 0.93867 0.95276 0.92485 0.92391 0.84581 0.82529 0.87842 0.84907 0.85716 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 7.90 71.98 0.57 -4.91 15 2 C 0.18 8.68 2.04 44.17 0.09 8.77 15 3 H 0.02 0.78 3.82 -2.39 -0.01 0.77 15 4 C -0.54 -31.86 9.03 25.60 0.23 -31.63 15 5 H 0.03 2.20 8.00 -2.91 -0.02 2.17 15 6 C 0.03 1.79 5.17 84.65 0.44 2.23 15 7 N -0.93 -58.94 13.96 21.45 0.30 -58.64 15 8 Si 0.92 45.68 25.84 68.60 1.77 47.45 15 9 H -0.28 -13.79 7.11 99.48 0.71 -13.08 15 10 H -0.28 -13.32 7.11 99.48 0.71 -12.62 15 11 H -0.24 -11.14 5.86 99.48 0.58 -10.55 15 12 N -0.64 -26.47 6.39 -452.09 -2.89 -29.35 15 13 C -0.06 -1.96 1.86 3.53 0.01 -1.95 15 14 C 0.26 7.55 5.14 71.98 0.37 7.92 15 15 F -0.22 -7.35 17.09 44.97 0.77 -6.58 15 16 F -0.22 -7.99 14.72 44.97 0.66 -7.32 15 17 C -0.12 -2.43 10.15 30.62 0.31 -2.12 15 18 C -0.14 -3.28 8.50 30.62 0.26 -3.02 15 19 H 0.04 1.94 8.14 -2.39 -0.02 1.92 15 20 H 0.03 1.34 5.25 -2.38 -0.01 1.33 15 21 H 0.06 2.13 5.98 -2.39 -0.01 2.11 15 22 H 0.27 15.78 8.31 -92.71 -0.77 15.01 15 23 H 0.34 14.68 8.29 -89.69 -0.74 13.94 15 24 H 0.16 2.75 8.08 -2.39 -0.02 2.73 15 25 H 0.10 2.30 8.14 -2.39 -0.02 2.28 15 26 H 0.13 1.76 8.14 -2.39 -0.02 1.74 15 27 H 0.12 2.15 8.14 -2.39 -0.02 2.13 15 28 H 0.10 2.62 6.95 -2.39 -0.02 2.60 15 Total: -1.00 -69.90 235.12 3.20 -66.70 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.31 Total: 12.47 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 2.28 Total: -24.72 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -2.59 Total: -88.00 kcal Atomic # 9 Polarization: -15.34 SS G_CDS: 1.43 Total: -13.91 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.77 Total: 47.45 kcal Total: -69.90 3.20 -66.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700179078.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.658 kcal (2) G-P(sol) polarization free energy of solvation -69.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds