Wall clock time and date at job start Mon Mar 30 2020 02:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39898 * 109.46681 * 2 1 4 4 F 1.39898 * 109.47063 * 240.00170 * 2 1 3 5 5 C 1.52995 * 109.47012 * 119.99962 * 2 1 3 6 6 N 1.46500 * 109.46942 * 180.02562 * 5 2 1 7 7 C 1.36939 * 119.99930 * 269.99536 * 6 5 2 8 8 H 1.08003 * 119.99317 * 144.80335 * 7 6 5 9 9 C 1.38807 * 120.00364 * 324.80833 * 7 6 5 10 10 N 1.31620 * 119.99896 * 338.03967 * 9 7 6 11 11 Si 1.86800 * 120.00168 * 158.04440 * 9 7 6 12 12 H 1.48499 * 109.47466 * 89.99564 * 11 9 7 13 13 H 1.48492 * 109.47036 * 210.00184 * 11 9 7 14 14 H 1.48507 * 109.46741 * 329.99533 * 11 9 7 15 15 C 1.46498 * 119.99992 * 90.00085 * 6 5 2 16 16 C 1.53007 * 117.50073 * 183.24597 * 15 6 5 17 17 C 1.53006 * 117.50072 * 114.58539 * 15 6 5 18 18 H 1.08996 * 109.47421 * 299.99458 * 1 2 3 19 19 H 1.09000 * 109.47226 * 60.00239 * 1 2 3 20 20 H 1.09008 * 109.46827 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47613 * 60.00452 * 5 2 1 22 22 H 1.09000 * 109.47657 * 300.00050 * 5 2 1 23 23 H 0.96995 * 119.99672 * 176.06622 * 10 9 7 24 24 H 1.09003 * 115.54975 * 328.92292 * 15 6 5 25 25 H 1.08993 * 117.49602 * 0.02562 * 16 15 6 26 26 H 1.08996 * 117.49719 * 145.01932 * 16 15 6 27 27 H 1.08997 * 117.49871 * 214.98192 * 17 15 6 28 28 H 1.09003 * 117.49524 * 359.97438 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 7 3.5050 -0.7207 1.2495 7 6 4.1902 -1.7474 0.6566 8 1 5.1221 -1.5514 0.1472 9 6 3.6869 -3.0400 0.7102 10 7 2.8289 -3.3736 1.6509 11 14 4.2275 -4.3059 -0.5525 12 1 5.4308 -5.0195 -0.0545 13 1 3.1306 -5.2815 -0.7762 14 1 4.5508 -3.6229 -1.8310 15 6 4.2370 0.3782 1.8842 16 6 5.7637 0.3604 1.7851 17 6 5.0791 0.0467 3.1179 18 1 -0.3634 0.5137 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0278 -0.0005 21 1 1.6768 -1.7489 1.2493 22 1 1.6767 -0.2075 2.1392 23 1 2.4338 -4.2594 1.6548 24 1 3.7422 1.3492 1.8587 25 1 6.2234 -0.4687 1.2474 26 1 6.2734 1.3196 1.6948 27 1 5.1387 0.7996 3.9037 28 1 5.0881 -0.9891 3.4575 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704761428.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:56 Heat of formation + Delta-G solvation = -76.458555 kcal Electronic energy + Delta-G solvation = -14277.690406 eV Core-core repulsion = 11579.192805 eV Total energy + Delta-G solvation = -2698.497601 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.52096 -47.56638 -38.75339 -35.53126 -33.46543 -31.71864 -27.81764 -25.54753 -23.07706 -22.44487 -21.63189 -18.67087 -18.27100 -17.23691 -17.15934 -16.57977 -16.25315 -15.67304 -14.62239 -14.48511 -13.99201 -13.84490 -13.51981 -13.40633 -13.28980 -13.01051 -12.78062 -12.63014 -12.40686 -12.19217 -11.91936 -11.57771 -11.33420 -10.90776 -10.52453 -8.61434 -7.88649 -5.50771 1.41579 1.45257 1.55822 2.46346 3.07563 3.20731 3.29460 3.38675 3.82464 3.82980 4.08534 4.27990 4.45496 4.50652 4.63732 4.76409 4.90899 5.00090 5.05601 5.07606 5.31595 5.47925 5.51239 5.67337 6.38533 7.05746 7.73279 8.23449 9.05825 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.024272 B = 0.018477 C = 0.012592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.304815 B = 1515.019811 C = 2223.022124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.250 3.750 3 F -0.220 7.220 4 F -0.219 7.219 5 C 0.108 3.892 6 N -0.564 5.564 7 C -0.257 4.257 8 H 0.055 0.945 9 C -0.029 4.029 10 N -0.912 5.912 11 Si 0.949 3.051 12 H -0.283 1.283 13 H -0.284 1.284 14 H -0.279 1.279 15 C 0.096 3.904 16 C -0.185 4.185 17 C -0.208 4.208 18 H 0.105 0.895 19 H 0.085 0.915 20 H 0.088 0.912 21 H 0.102 0.898 22 H 0.070 0.930 23 H 0.255 0.745 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 6.487 -0.606 7.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.211 3.789 3 F -0.201 7.201 4 F -0.201 7.201 5 C -0.020 4.020 6 N -0.280 5.280 7 C -0.387 4.387 8 H 0.073 0.927 9 C -0.227 4.227 10 N -0.556 5.556 11 Si 0.777 3.223 12 H -0.209 1.209 13 H -0.210 1.210 14 H -0.205 1.205 15 C -0.012 4.012 16 C -0.223 4.223 17 C -0.248 4.248 18 H 0.123 0.877 19 H 0.104 0.896 20 H 0.107 0.893 21 H 0.120 0.880 22 H 0.088 0.912 23 H 0.064 0.936 24 H 0.127 0.873 25 H 0.093 0.907 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.589 6.317 -0.577 7.288 hybrid contribution 0.455 -0.870 -0.699 1.205 sum -3.134 5.448 -1.276 6.413 Atomic orbital electron populations 1.22668 0.89650 1.05647 1.05850 1.22682 0.94654 0.75120 0.86419 1.92869 1.91224 1.38952 1.97056 1.92912 1.91224 1.81518 1.54429 1.22027 0.84763 1.02750 0.92490 1.43435 1.00673 1.21629 1.62309 1.19109 1.06891 0.86163 1.26511 0.92732 1.25641 1.00489 0.98106 0.98421 1.70074 1.33879 1.20485 1.31204 0.85580 0.77587 0.79147 0.79998 1.20927 1.20957 1.20467 1.21570 0.90341 0.92064 0.97231 1.23052 0.95787 1.02494 1.00925 1.23275 1.08564 1.00865 0.92127 0.87665 0.89635 0.89301 0.88027 0.91178 0.93560 0.87338 0.90724 0.87145 0.87598 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.23 9.38 71.98 0.68 -4.56 15 2 C 0.25 10.10 2.25 30.59 0.07 10.17 15 3 F -0.22 -8.92 16.23 44.97 0.73 -8.19 15 4 F -0.22 -10.39 16.53 44.97 0.74 -9.65 15 5 C 0.11 4.89 4.90 86.38 0.42 5.31 15 6 N -0.56 -28.28 2.69 -678.02 -1.82 -30.10 15 7 C -0.26 -14.16 8.14 84.03 0.68 -13.48 15 8 H 0.06 3.09 6.55 -2.91 -0.02 3.07 15 9 C -0.03 -1.62 4.96 84.86 0.42 -1.20 15 10 N -0.91 -51.50 11.33 21.65 0.25 -51.26 15 11 Si 0.95 45.12 29.61 68.60 2.03 47.15 15 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 15 13 H -0.28 -13.21 7.11 99.48 0.71 -12.51 15 14 H -0.28 -13.31 7.11 99.48 0.71 -12.61 15 15 C 0.10 4.13 6.25 45.00 0.28 4.41 15 16 C -0.18 -7.28 9.80 30.62 0.30 -6.98 15 17 C -0.21 -8.30 10.36 30.62 0.32 -7.98 15 18 H 0.10 2.51 8.14 -2.39 -0.02 2.49 15 19 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 20 H 0.09 2.51 8.14 -2.38 -0.02 2.49 15 21 H 0.10 5.17 5.36 -2.39 -0.01 5.15 15 22 H 0.07 2.88 8.07 -2.39 -0.02 2.87 15 23 H 0.26 13.85 8.32 -92.71 -0.77 13.08 15 24 H 0.11 4.27 7.70 -2.39 -0.02 4.25 15 25 H 0.07 3.30 6.37 -2.39 -0.02 3.28 15 26 H 0.11 3.56 8.14 -2.39 -0.02 3.54 15 27 H 0.11 3.47 8.14 -2.39 -0.02 3.45 15 28 H 0.06 2.78 8.14 -2.39 -0.02 2.76 15 Total: -1.00 -61.60 244.98 6.24 -55.36 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 1.15 Total: 11.00 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 3.17 Total: -14.31 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -1.58 Total: -81.36 kcal Atomic # 9 Polarization: -19.31 SS G_CDS: 1.47 Total: -17.84 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -61.60 6.24 -55.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704761428.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.099 kcal (2) G-P(sol) polarization free energy of solvation -61.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds