Wall clock time and date at job start Mon Mar 30 2020 02:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34853 * 125.89150 * 2 1 4 4 C 1.40893 * 107.42070 * 179.97438 * 3 2 1 5 5 C 1.34857 * 107.41266 * 359.74157 * 4 3 2 6 6 N 1.36340 * 108.22074 * 0.41987 * 5 4 3 7 7 C 1.46498 * 125.63715 * 179.82761 * 6 5 4 8 8 C 1.53001 * 109.47422 * 267.98767 * 7 6 5 9 9 C 1.50693 * 115.55095 * 302.83778 * 8 7 6 10 10 H 1.08004 * 120.00321 * 92.48897 * 9 8 7 11 11 C 1.37877 * 119.99756 * 272.48843 * 9 8 7 12 12 N 1.31516 * 119.99891 * 175.30897 * 11 9 8 13 13 Si 1.86801 * 120.00389 * 355.30914 * 11 9 8 14 14 H 1.48498 * 109.46904 * 274.00037 * 13 11 9 15 15 H 1.48509 * 109.46717 * 33.99312 * 13 11 9 16 16 H 1.48491 * 109.47416 * 153.99161 * 13 11 9 17 17 C 1.53000 * 117.51123 * 88.53583 * 8 7 6 18 18 C 1.53000 * 60.00093 * 107.48149 * 17 8 7 19 19 H 1.09000 * 109.47357 * 273.48781 * 1 2 3 20 20 H 1.09002 * 109.47252 * 33.49082 * 1 2 3 21 21 H 1.08997 * 109.47220 * 153.49000 * 1 2 3 22 22 H 1.08003 * 126.28698 * 359.97438 * 3 2 1 23 23 H 1.07996 * 126.29097 * 180.02562 * 4 3 2 24 24 H 1.07998 * 125.88787 * 180.25805 * 5 4 3 25 25 H 1.09006 * 109.46705 * 147.98539 * 7 6 5 26 26 H 1.09002 * 109.46720 * 27.99641 * 7 6 5 27 27 H 0.97001 * 120.00126 * 179.97438 * 12 11 9 28 28 H 1.09004 * 117.49486 * 214.96571 * 17 8 7 29 29 H 1.08992 * 117.50263 * 359.97438 * 17 8 7 30 30 H 1.08999 * 117.49868 * 252.51136 * 18 17 8 31 31 H 1.08995 * 117.52137 * 107.47354 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6339 0.6461 0.0006 5 6 3.6090 -0.7022 0.0067 6 7 2.3063 -1.1046 0.0005 7 6 1.8421 -2.4941 0.0005 8 6 1.6402 -2.9644 -1.4414 9 6 0.6848 -2.1409 -2.2659 10 1 1.0564 -1.3262 -2.8698 11 6 -0.6638 -2.4275 -2.2494 12 7 -1.5085 -1.6533 -2.8949 13 14 -1.2911 -3.9154 -1.3103 14 1 -1.2128 -5.1177 -2.1783 15 1 -0.4571 -4.1240 -0.0993 16 1 -2.7017 -3.6873 -0.9065 17 6 2.8430 -3.5802 -2.1589 18 6 1.6844 -4.4708 -1.7058 19 1 -0.3634 0.0625 1.0257 20 1 -0.3634 0.8571 -0.5671 21 1 -0.3633 -0.9196 -0.4587 22 1 1.9670 2.1207 -0.0004 23 1 4.5159 1.2692 0.0011 24 1 4.4721 -1.3513 0.0127 25 1 0.8975 -2.5615 0.5404 26 1 2.5851 -3.1253 0.4880 27 1 -2.4572 -1.8551 -2.8837 28 1 2.9432 -3.3897 -3.2275 29 1 3.7785 -3.6500 -1.6040 30 1 1.8576 -5.1266 -0.8526 31 1 1.0220 -4.8661 -2.4758 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706147651.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:06 Heat of formation + Delta-G solvation = 71.918586 kcal Electronic energy + Delta-G solvation = -13677.186709 eV Core-core repulsion = 11539.352753 eV Total energy + Delta-G solvation = -2137.833955 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.39482 -36.98043 -32.31328 -31.47939 -30.53506 -26.30256 -25.12606 -24.94969 -21.77666 -19.71588 -19.52351 -18.15582 -16.57983 -15.63858 -15.02858 -14.45502 -13.53539 -13.48084 -12.76047 -12.61428 -12.35533 -11.93488 -11.70287 -11.48416 -11.38726 -11.23137 -10.83242 -10.69003 -10.38739 -10.32488 -9.72161 -9.18434 -8.66390 -8.57586 -7.71992 -7.08925 -6.18519 -4.19707 3.13049 3.18906 3.29267 3.29928 3.81469 3.86555 4.30491 4.83761 5.06605 5.48602 5.68416 5.77530 5.90706 5.96179 6.01363 6.20192 6.25460 6.34254 6.39366 6.45997 6.55050 6.59261 6.87739 6.99057 7.07764 7.11606 7.21519 7.60883 7.90765 8.17197 8.30190 8.44950 8.88316 9.41804 10.92293 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.033207 B = 0.015300 C = 0.012230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.985502 B = 1829.570553 C = 2288.918643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.063 3.937 3 C -0.231 4.231 4 C -0.210 4.210 5 C -0.029 4.029 6 N -0.415 5.415 7 C 0.135 3.865 8 C -0.017 4.017 9 C -0.476 4.476 10 H 0.079 0.921 11 C 0.080 3.920 12 N -0.888 5.888 13 Si 0.873 3.127 14 H -0.277 1.277 15 H -0.263 1.263 16 H -0.293 1.293 17 C -0.174 4.174 18 C -0.198 4.198 19 H 0.046 0.954 20 H 0.069 0.931 21 H 0.099 0.901 22 H 0.122 0.878 23 H 0.122 0.878 24 H 0.147 0.853 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.266 0.734 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 -1.496 6.210 8.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.051 4.051 3 C -0.255 4.255 4 C -0.235 4.235 5 C -0.159 4.159 6 N -0.088 5.088 7 C 0.013 3.987 8 C -0.018 4.018 9 C -0.513 4.513 10 H 0.097 0.903 11 C -0.123 4.123 12 N -0.525 5.525 13 Si 0.701 3.299 14 H -0.203 1.203 15 H -0.188 1.188 16 H -0.220 1.220 17 C -0.211 4.211 18 C -0.236 4.236 19 H 0.065 0.935 20 H 0.088 0.912 21 H 0.118 0.882 22 H 0.140 0.860 23 H 0.140 0.860 24 H 0.164 0.836 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.871 -1.821 6.161 8.062 hybrid contribution -0.323 -0.885 0.296 0.987 sum 4.548 -2.706 6.457 8.348 Atomic orbital electron populations 1.20511 0.88656 1.06003 1.00078 1.20275 0.93533 0.85449 1.05811 1.20465 0.92884 0.96986 1.15143 1.20606 0.96744 0.93599 1.12566 1.21492 0.86269 0.95463 1.12692 1.43867 1.05262 1.05743 1.53900 1.21622 0.99176 0.79488 0.98423 1.19767 0.98243 0.91437 0.92378 1.20141 0.89736 1.15399 1.26036 0.90299 1.24934 0.96565 0.95914 0.94862 1.69901 1.02989 1.37377 1.42188 0.87010 0.77649 0.84009 0.81260 1.20281 1.18784 1.22011 1.22808 0.91810 1.05788 1.00741 1.22987 1.03220 0.94661 1.02748 0.93510 0.91206 0.88208 0.85967 0.86029 0.83572 0.90170 0.91833 0.92443 0.89411 0.91061 0.90846 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 9.70 36.00 0.35 -1.65 16 2 C 0.06 1.36 6.32 -81.79 -0.52 0.84 16 3 C -0.23 -4.67 10.76 -39.78 -0.43 -5.10 16 4 C -0.21 -3.97 10.86 -39.78 -0.43 -4.40 16 5 C -0.03 -0.55 11.43 -16.75 -0.19 -0.74 16 6 N -0.41 -8.61 2.61 -112.54 -0.29 -8.91 16 7 C 0.14 2.73 5.39 -4.04 -0.02 2.70 16 8 C -0.02 -0.37 1.10 -155.66 -0.17 -0.54 16 9 C -0.48 -12.50 7.26 -34.44 -0.25 -12.75 16 10 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 11 C 0.08 2.13 3.84 -17.82 -0.07 2.06 16 12 N -0.89 -25.27 13.96 55.43 0.77 -24.50 16 13 Si 0.87 20.34 24.65 -169.99 -4.19 16.15 16 14 H -0.28 -6.42 7.02 56.52 0.40 -6.03 16 15 H -0.26 -5.74 6.01 56.52 0.34 -5.40 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 C -0.17 -3.45 9.93 -26.73 -0.27 -3.71 16 18 C -0.20 -3.99 7.44 -26.73 -0.20 -4.19 16 19 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 20 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 21 H 0.10 2.35 4.30 -51.93 -0.22 2.13 16 22 H 0.12 2.24 8.06 -52.48 -0.42 1.81 16 23 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 24 H 0.15 2.35 8.06 -52.49 -0.42 1.93 16 25 H 0.08 1.65 6.53 -51.93 -0.34 1.31 16 26 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.09 1.94 6.78 -51.93 -0.35 1.59 16 LS Contribution 252.37 15.07 3.80 3.80 Total: -1.00 -28.10 252.37 -6.45 -34.55 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.34 Total: 6.38 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -2.20 Total: -27.48 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.48 Total: -33.40 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.19 Total: 16.15 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.10 -6.45 -34.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706147651.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.468 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds