Wall clock time and date at job start Mon Mar 30 2020 02:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34853 * 125.89150 * 2 1 4 4 C 1.40893 * 107.42070 * 179.97438 * 3 2 1 5 5 C 1.34857 * 107.41266 * 359.74157 * 4 3 2 6 6 N 1.36340 * 108.22074 * 0.41987 * 5 4 3 7 7 C 1.46498 * 125.63715 * 179.82761 * 6 5 4 8 8 C 1.53001 * 109.47422 * 267.98767 * 7 6 5 9 9 C 1.50693 * 115.55095 * 302.83778 * 8 7 6 10 10 H 1.08004 * 120.00321 * 92.48897 * 9 8 7 11 11 C 1.37877 * 119.99756 * 272.48843 * 9 8 7 12 12 N 1.31516 * 119.99891 * 175.30897 * 11 9 8 13 13 Si 1.86801 * 120.00389 * 355.30914 * 11 9 8 14 14 H 1.48498 * 109.46904 * 274.00037 * 13 11 9 15 15 H 1.48509 * 109.46717 * 33.99312 * 13 11 9 16 16 H 1.48491 * 109.47416 * 153.99161 * 13 11 9 17 17 C 1.53000 * 117.51123 * 88.53583 * 8 7 6 18 18 C 1.53000 * 60.00093 * 107.48149 * 17 8 7 19 19 H 1.09000 * 109.47357 * 273.48781 * 1 2 3 20 20 H 1.09002 * 109.47252 * 33.49082 * 1 2 3 21 21 H 1.08997 * 109.47220 * 153.49000 * 1 2 3 22 22 H 1.08003 * 126.28698 * 359.97438 * 3 2 1 23 23 H 1.07996 * 126.29097 * 180.02562 * 4 3 2 24 24 H 1.07998 * 125.88787 * 180.25805 * 5 4 3 25 25 H 1.09006 * 109.46705 * 147.98539 * 7 6 5 26 26 H 1.09002 * 109.46720 * 27.99641 * 7 6 5 27 27 H 0.97001 * 120.00126 * 179.97438 * 12 11 9 28 28 H 1.09004 * 117.49486 * 214.96571 * 17 8 7 29 29 H 1.08992 * 117.50263 * 359.97438 * 17 8 7 30 30 H 1.08999 * 117.49868 * 252.51136 * 18 17 8 31 31 H 1.08995 * 117.52137 * 107.47354 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6339 0.6461 0.0006 5 6 3.6090 -0.7022 0.0067 6 7 2.3063 -1.1046 0.0005 7 6 1.8421 -2.4941 0.0005 8 6 1.6402 -2.9644 -1.4414 9 6 0.6848 -2.1409 -2.2659 10 1 1.0564 -1.3262 -2.8698 11 6 -0.6638 -2.4275 -2.2494 12 7 -1.5085 -1.6533 -2.8949 13 14 -1.2911 -3.9154 -1.3103 14 1 -1.2128 -5.1177 -2.1783 15 1 -0.4571 -4.1240 -0.0993 16 1 -2.7017 -3.6873 -0.9065 17 6 2.8430 -3.5802 -2.1589 18 6 1.6844 -4.4708 -1.7058 19 1 -0.3634 0.0625 1.0257 20 1 -0.3634 0.8571 -0.5671 21 1 -0.3633 -0.9196 -0.4587 22 1 1.9670 2.1207 -0.0004 23 1 4.5159 1.2692 0.0011 24 1 4.4721 -1.3513 0.0127 25 1 0.8975 -2.5615 0.5404 26 1 2.5851 -3.1253 0.4880 27 1 -2.4572 -1.8551 -2.8837 28 1 2.9432 -3.3897 -3.2275 29 1 3.7785 -3.6500 -1.6040 30 1 1.8576 -5.1266 -0.8526 31 1 1.0220 -4.8661 -2.4758 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706147651.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:06 Heat of formation + Delta-G solvation = 56.279423 kcal Electronic energy + Delta-G solvation = -13677.864874 eV Core-core repulsion = 11539.352753 eV Total energy + Delta-G solvation = -2138.512120 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.91687 -38.62850 -34.32327 -33.00781 -32.14670 -28.09554 -26.85377 -26.54023 -23.35401 -21.26446 -21.20657 -19.80008 -18.35546 -17.30871 -16.81863 -16.05450 -15.16425 -15.10022 -14.68185 -14.23173 -13.93367 -13.52474 -13.35053 -13.10602 -12.97213 -12.93283 -12.54344 -12.26941 -12.07879 -12.00234 -11.56513 -10.96829 -10.55937 -10.35050 -9.26168 -8.62294 -8.24060 -6.28673 1.34715 1.38199 1.47565 1.59427 2.30457 2.33561 2.37975 3.09636 3.22881 3.96493 4.14397 4.25442 4.34823 4.40565 4.47001 4.65882 4.70336 4.82344 4.84925 4.87345 4.97575 5.04544 5.25904 5.43113 5.43660 5.60266 5.61873 5.69727 6.34662 6.39708 6.61208 6.74992 6.83332 7.36075 8.90927 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.033207 B = 0.015300 C = 0.012230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.985502 B = 1829.570553 C = 2288.918643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.028 3.972 3 C -0.243 4.243 4 C -0.220 4.220 5 C -0.027 4.027 6 N -0.424 5.424 7 C 0.138 3.862 8 C -0.045 4.045 9 C -0.466 4.466 10 H 0.018 0.982 11 C 0.035 3.965 12 N -0.939 5.939 13 Si 0.926 3.074 14 H -0.272 1.272 15 H -0.231 1.231 16 H -0.301 1.301 17 C -0.162 4.162 18 C -0.186 4.186 19 H 0.070 0.930 20 H 0.057 0.943 21 H 0.073 0.927 22 H 0.131 0.869 23 H 0.148 0.852 24 H 0.181 0.819 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.264 0.736 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.089 -3.305 8.080 11.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.267 4.267 4 C -0.244 4.244 5 C -0.157 4.157 6 N -0.098 5.098 7 C 0.016 3.984 8 C -0.046 4.046 9 C -0.504 4.504 10 H 0.037 0.963 11 C -0.164 4.164 12 N -0.578 5.578 13 Si 0.752 3.248 14 H -0.197 1.197 15 H -0.154 1.154 16 H -0.228 1.228 17 C -0.199 4.199 18 C -0.224 4.224 19 H 0.088 0.912 20 H 0.076 0.924 21 H 0.092 0.908 22 H 0.149 0.851 23 H 0.166 0.834 24 H 0.199 0.801 25 H 0.091 0.909 26 H 0.121 0.879 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.790 -3.635 8.040 11.134 hybrid contribution -0.843 -0.214 -0.369 0.945 sum 5.947 -3.850 7.671 10.442 Atomic orbital electron populations 1.20392 0.89251 1.04026 1.01027 1.20441 0.93700 0.86597 1.07769 1.20799 0.93871 0.97349 1.14680 1.20987 0.96924 0.94254 1.12273 1.22120 0.86442 0.96135 1.11046 1.44015 1.05837 1.05765 1.54138 1.21612 1.00243 0.79743 0.96815 1.19694 0.99128 0.92480 0.93344 1.20053 0.90768 1.14083 1.25476 0.96344 1.25611 0.96591 0.98473 0.95695 1.70056 1.03210 1.39729 1.44767 0.86125 0.77030 0.80438 0.81254 1.19738 1.15387 1.22849 1.22846 0.92733 1.04274 1.00064 1.23036 1.02557 0.93439 1.03379 0.91158 0.92397 0.90808 0.85090 0.83403 0.80146 0.90943 0.87898 0.92702 0.91155 0.87502 0.87175 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.85 9.70 71.23 0.69 -3.15 16 2 C 0.03 1.21 6.32 41.08 0.26 1.47 16 3 C -0.24 -9.65 10.76 22.14 0.24 -9.41 16 4 C -0.22 -7.79 10.86 22.14 0.24 -7.55 16 5 C -0.03 -0.95 11.43 83.22 0.95 0.00 16 6 N -0.42 -16.74 2.61 -509.96 -1.33 -18.07 16 7 C 0.14 5.11 5.39 86.38 0.47 5.58 16 8 C -0.05 -1.90 1.10 -52.93 -0.06 -1.95 16 9 C -0.47 -25.01 7.26 25.60 0.19 -24.82 16 10 H 0.02 1.18 8.06 -2.91 -0.02 1.15 16 11 C 0.03 1.87 3.84 84.65 0.33 2.20 16 12 N -0.94 -55.79 13.96 21.45 0.30 -55.49 16 13 Si 0.93 41.36 24.65 68.60 1.69 43.06 16 14 H -0.27 -11.85 7.02 99.48 0.70 -11.15 16 15 H -0.23 -9.05 6.01 99.48 0.60 -8.45 16 16 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 17 C -0.16 -5.90 9.93 30.59 0.30 -5.60 16 18 C -0.19 -6.80 7.44 30.59 0.23 -6.58 16 19 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 20 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 21 H 0.07 3.56 4.30 -2.39 -0.01 3.55 16 22 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 23 H 0.15 4.33 8.06 -2.91 -0.02 4.30 16 24 H 0.18 4.88 8.06 -2.91 -0.02 4.85 16 25 H 0.07 2.77 6.53 -2.38 -0.02 2.76 16 26 H 0.10 3.01 8.10 -2.39 -0.02 2.99 16 27 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 28 H 0.07 2.78 8.14 -2.38 -0.02 2.77 16 29 H 0.11 3.14 8.14 -2.39 -0.02 3.13 16 30 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.07 2.98 6.78 -2.39 -0.02 2.96 16 Total: -1.00 -62.85 252.37 5.47 -57.38 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.98 Total: 22.96 kcal Atomic # 6 Polarization: -53.66 SS G_CDS: 3.83 Total: -49.83 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -1.03 Total: -73.56 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.69 Total: 43.06 kcal Total: -62.85 5.47 -57.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706147651.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.660 kcal (2) G-P(sol) polarization free energy of solvation -62.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds