Wall clock time and date at job start Mon Mar 30 2020 02:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47296 * 2 1 4 4 C 1.50707 * 109.46848 * 120.00177 * 2 1 3 5 5 H 1.07995 * 119.99856 * 119.99684 * 4 2 1 6 6 C 1.37879 * 119.99687 * 299.99713 * 4 2 1 7 7 N 1.31513 * 120.00090 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99706 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47509 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47507 * 119.99926 * 8 6 4 11 11 H 1.48504 * 109.47074 * 239.99982 * 8 6 4 12 12 N 1.46904 * 109.46954 * 239.99478 * 2 1 3 13 13 C 1.47964 * 110.99457 * 172.73794 * 12 2 1 14 14 C 1.53938 * 86.30036 * 222.47697 * 13 12 2 15 15 C 1.52998 * 113.73269 * 138.03051 * 14 13 12 16 16 F 1.39898 * 109.47011 * 304.99564 * 15 14 13 17 17 F 1.39896 * 109.47164 * 64.99843 * 15 14 13 18 18 C 1.48191 * 111.06809 * 73.45436 * 12 2 1 19 19 H 1.08999 * 109.47212 * 185.94247 * 1 2 3 20 20 H 1.09006 * 109.46718 * 305.94553 * 1 2 3 21 21 H 1.08994 * 109.46734 * 65.94063 * 1 2 3 22 22 H 0.97008 * 119.99788 * 179.97438 * 7 6 4 23 23 H 1.09001 * 113.75380 * 108.10581 * 13 12 2 24 24 H 1.08995 * 113.76016 * 336.85136 * 13 12 2 25 25 H 1.09010 * 113.73216 * 269.31232 * 14 13 12 26 26 H 1.09001 * 109.47077 * 184.99840 * 15 14 13 27 27 H 1.08991 * 113.66219 * 23.13492 * 18 12 2 28 28 H 1.09003 * 113.91963 * 251.81308 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.1482 -2.2857 3.6039 10 1 3.1472 -0.1859 4.8162 11 1 1.1676 -1.5866 4.8165 12 7 2.0197 -0.6926 -1.1994 13 6 3.4884 -0.5630 -1.3240 14 6 3.2391 -0.3127 -2.8223 15 6 4.0970 0.8094 -3.4103 16 9 3.9100 1.9786 -2.6652 17 9 5.4450 0.4382 -3.3652 18 6 1.8260 0.1385 -2.4109 19 1 -0.3633 -1.0221 0.1064 20 1 -0.3633 0.6033 0.8320 21 1 -0.3632 0.4189 -0.9384 22 1 0.7081 1.1609 3.4845 23 1 4.0298 -1.4861 -1.1171 24 1 3.8994 0.2982 -0.7974 25 1 3.2514 -1.2198 -3.4267 26 1 3.8035 0.9871 -4.4449 27 1 1.7491 1.2054 -2.2018 28 1 1.0394 -0.2227 -3.0735 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707084313.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:28 Heat of formation + Delta-G solvation = -74.181432 kcal Electronic energy + Delta-G solvation = -13832.909873 eV Core-core repulsion = 11134.511016 eV Total energy + Delta-G solvation = -2698.398857 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.72286 -46.72386 -39.05274 -33.69488 -30.87073 -28.01273 -26.05401 -24.55038 -23.81878 -20.06338 -19.15623 -17.32552 -16.95152 -16.58059 -15.94293 -15.09491 -14.44512 -13.64410 -13.35050 -13.29423 -13.07094 -12.66707 -12.40325 -11.88284 -11.70377 -11.10823 -10.95806 -10.79319 -10.63374 -10.40034 -10.13977 -10.04977 -9.44685 -8.89928 -8.48144 -7.73845 -6.02249 -4.06883 3.29923 3.37523 3.42486 4.00390 4.33818 4.42092 4.45852 4.76340 5.01725 5.29653 5.35293 5.59192 5.85650 6.07770 6.15377 6.39052 6.51936 6.63483 6.83732 7.03720 7.34333 7.42880 7.80555 8.02597 8.24090 8.46030 8.98793 9.58212 11.05151 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.044664 B = 0.009465 C = 0.008759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.747607 B = 2957.539559 C = 3195.813248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.179 3.821 3 H 0.008 0.992 4 C -0.505 4.505 5 H 0.061 0.939 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.472 5.472 13 C 0.033 3.967 14 C -0.183 4.183 15 C 0.267 3.733 16 F -0.203 7.203 17 F -0.208 7.208 18 C 0.011 3.989 19 H 0.035 0.965 20 H 0.081 0.919 21 H 0.006 0.994 22 H 0.260 0.740 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.699 -0.079 -10.769 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.073 3.927 3 H 0.026 0.974 4 C -0.544 4.544 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.195 5.195 13 C -0.096 4.096 14 C -0.202 4.202 15 C 0.213 3.787 16 F -0.184 7.184 17 F -0.190 7.190 18 C -0.119 4.119 19 H 0.054 0.946 20 H 0.100 0.900 21 H 0.025 0.975 22 H 0.070 0.930 23 H 0.100 0.900 24 H 0.091 0.909 25 H 0.137 0.863 26 H 0.123 0.877 27 H 0.089 0.911 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.322 -0.589 -10.524 11.051 hybrid contribution 0.658 0.497 0.998 1.295 sum 3.979 -0.092 -9.525 10.324 Atomic orbital electron populations 1.21702 0.97436 1.00443 0.98860 1.19801 0.93037 0.92595 0.87311 0.97418 1.21087 1.31161 1.12358 0.89757 0.92054 1.24937 0.95133 0.95039 0.99085 1.69915 1.36896 1.23019 1.23363 0.86451 0.78604 0.79636 0.82799 1.19729 1.21074 1.20986 1.68673 1.05733 1.42004 1.03112 1.23540 0.93543 1.01972 0.90532 1.24376 0.97421 0.98344 1.00075 1.21815 0.78210 0.82710 0.95935 1.92980 1.94928 1.50614 1.79894 1.92955 1.36558 1.91838 1.97629 1.23848 0.93808 0.98278 0.95930 0.94614 0.89998 0.97485 0.93005 0.90007 0.90896 0.86328 0.87688 0.91064 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.05 37.16 0.34 -2.80 15 2 C 0.18 4.61 1.65 -68.86 -0.11 4.50 15 3 H 0.01 0.23 7.69 -51.93 -0.40 -0.17 15 4 C -0.51 -14.15 8.21 -34.44 -0.28 -14.44 15 5 H 0.06 1.73 7.71 -52.49 -0.40 1.33 15 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 15 7 N -0.89 -25.84 11.39 55.43 0.63 -25.20 15 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 15 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 12 N -0.47 -10.26 5.97 -230.71 -1.38 -11.64 15 13 C 0.03 0.65 6.70 -2.76 -0.02 0.63 15 14 C -0.18 -2.76 4.24 -89.68 -0.38 -3.14 15 15 C 0.27 3.63 5.31 37.16 0.20 3.82 15 16 F -0.20 -3.36 15.74 2.25 0.04 -3.32 15 17 F -0.21 -3.09 17.28 2.25 0.04 -3.05 15 18 C 0.01 0.19 6.62 -2.64 -0.02 0.17 15 19 H 0.03 0.88 8.14 -51.93 -0.42 0.46 15 20 H 0.08 2.21 6.25 -51.93 -0.32 1.89 15 21 H 0.01 0.14 7.51 -51.93 -0.39 -0.25 15 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 23 H 0.08 1.54 8.14 -51.93 -0.42 1.12 15 24 H 0.07 1.56 7.42 -51.93 -0.39 1.18 15 25 H 0.12 1.54 8.14 -51.92 -0.42 1.11 15 26 H 0.11 1.00 8.14 -51.93 -0.42 0.58 15 27 H 0.07 1.31 6.87 -51.93 -0.36 0.95 15 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 LS Contribution 240.80 15.07 3.63 3.63 Total: -1.00 -29.76 240.80 -5.95 -35.70 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -3.51 Total: -3.08 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -0.37 Total: -9.68 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.75 Total: -36.84 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.07 Total: -6.37 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.76 -5.95 -35.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707084313.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.477 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds