Wall clock time and date at job start Mon Mar 30 2020 02:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47296 * 2 1 4 4 C 1.50707 * 109.46848 * 120.00177 * 2 1 3 5 5 H 1.07995 * 119.99856 * 119.99684 * 4 2 1 6 6 C 1.37879 * 119.99687 * 299.99713 * 4 2 1 7 7 N 1.31513 * 120.00090 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99706 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47509 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47507 * 119.99926 * 8 6 4 11 11 H 1.48504 * 109.47074 * 239.99982 * 8 6 4 12 12 N 1.46904 * 109.46954 * 239.99478 * 2 1 3 13 13 C 1.47964 * 110.99457 * 172.73794 * 12 2 1 14 14 C 1.53938 * 86.30036 * 222.47697 * 13 12 2 15 15 C 1.52998 * 113.73269 * 138.03051 * 14 13 12 16 16 F 1.39898 * 109.47011 * 304.99564 * 15 14 13 17 17 F 1.39896 * 109.47164 * 64.99843 * 15 14 13 18 18 C 1.48191 * 111.06809 * 73.45436 * 12 2 1 19 19 H 1.08999 * 109.47212 * 185.94247 * 1 2 3 20 20 H 1.09006 * 109.46718 * 305.94553 * 1 2 3 21 21 H 1.08994 * 109.46734 * 65.94063 * 1 2 3 22 22 H 0.97008 * 119.99788 * 179.97438 * 7 6 4 23 23 H 1.09001 * 113.75380 * 108.10581 * 13 12 2 24 24 H 1.08995 * 113.76016 * 336.85136 * 13 12 2 25 25 H 1.09010 * 113.73216 * 269.31232 * 14 13 12 26 26 H 1.09001 * 109.47077 * 184.99840 * 15 14 13 27 27 H 1.08991 * 113.66219 * 23.13492 * 18 12 2 28 28 H 1.09003 * 113.91963 * 251.81308 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.1482 -2.2857 3.6039 10 1 3.1472 -0.1859 4.8162 11 1 1.1676 -1.5866 4.8165 12 7 2.0197 -0.6926 -1.1994 13 6 3.4884 -0.5630 -1.3240 14 6 3.2391 -0.3127 -2.8223 15 6 4.0970 0.8094 -3.4103 16 9 3.9100 1.9786 -2.6652 17 9 5.4450 0.4382 -3.3652 18 6 1.8260 0.1385 -2.4109 19 1 -0.3633 -1.0221 0.1064 20 1 -0.3633 0.6033 0.8320 21 1 -0.3632 0.4189 -0.9384 22 1 0.7081 1.1609 3.4845 23 1 4.0298 -1.4861 -1.1171 24 1 3.8994 0.2982 -0.7974 25 1 3.2514 -1.2198 -3.4267 26 1 3.8035 0.9871 -4.4449 27 1 1.7491 1.2054 -2.2018 28 1 1.0394 -0.2227 -3.0735 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707084313.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:28 Heat of formation + Delta-G solvation = -94.815150 kcal Electronic energy + Delta-G solvation = -13833.804618 eV Core-core repulsion = 11134.511016 eV Total energy + Delta-G solvation = -2699.293602 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.87130 -47.88746 -40.62027 -35.69631 -32.76459 -29.54784 -27.85498 -26.37770 -25.31194 -21.84371 -20.60443 -18.72266 -18.19279 -18.09586 -17.64301 -16.68924 -16.27590 -15.16131 -14.99103 -14.67635 -14.46659 -14.29794 -13.84619 -13.51403 -13.33227 -12.95357 -12.75973 -12.54300 -12.39216 -12.20346 -11.94729 -11.70275 -11.06813 -10.91913 -10.59562 -9.51504 -8.16580 -6.28995 1.38082 1.39287 1.51671 2.38624 2.84297 3.07357 3.15137 3.28573 3.52250 3.76127 4.24182 4.33409 4.41634 4.58582 4.70534 4.78629 4.80247 4.95214 4.99315 5.19715 5.40967 5.42225 5.66284 6.03011 6.22377 6.48207 6.83397 7.40220 8.90097 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.044664 B = 0.009465 C = 0.008759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.747607 B = 2957.539559 C = 3195.813248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.185 3.815 3 H -0.029 1.029 4 C -0.524 4.524 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.277 1.277 12 N -0.488 5.488 13 C 0.020 3.980 14 C -0.154 4.154 15 C 0.264 3.736 16 F -0.224 7.224 17 F -0.216 7.216 18 C 0.010 3.990 19 H 0.029 0.971 20 H 0.056 0.944 21 H 0.032 0.968 22 H 0.263 0.737 23 H 0.083 0.917 24 H 0.043 0.957 25 H 0.153 0.847 26 H 0.163 0.837 27 H 0.059 0.941 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.979 -0.884 -12.171 12.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.077 3.923 3 H -0.011 1.011 4 C -0.563 4.563 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.202 1.202 12 N -0.210 5.210 13 C -0.109 4.109 14 C -0.173 4.173 15 C 0.211 3.789 16 F -0.206 7.206 17 F -0.197 7.197 18 C -0.119 4.119 19 H 0.048 0.952 20 H 0.074 0.926 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.101 0.899 24 H 0.062 0.938 25 H 0.170 0.830 26 H 0.180 0.820 27 H 0.077 0.923 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.607 -1.397 -11.941 12.552 hybrid contribution 0.579 0.748 1.396 1.686 sum 4.185 -0.648 -10.545 11.364 Atomic orbital electron populations 1.21517 0.96999 0.99618 0.99162 1.19568 0.93330 0.90677 0.88709 1.01112 1.21368 1.31326 1.12316 0.91262 0.92921 1.25744 0.95281 0.95747 1.02042 1.70035 1.37668 1.24122 1.24123 0.85453 0.78224 0.78575 0.79076 1.19291 1.20563 1.20220 1.68582 1.07056 1.42480 1.02920 1.23530 0.92212 1.00901 0.94299 1.24273 0.95614 1.00169 0.97279 1.22281 0.77445 0.81128 0.98077 1.92947 1.94997 1.51847 1.80813 1.92943 1.37167 1.91841 1.97743 1.23923 0.96478 0.97194 0.94271 0.95164 0.92562 0.94877 0.92824 0.89876 0.93833 0.82967 0.82029 0.92320 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.75 9.05 71.98 0.65 -5.10 15 2 C 0.18 9.69 1.65 44.17 0.07 9.76 15 3 H -0.03 -1.68 7.69 -2.39 -0.02 -1.70 15 4 C -0.52 -29.96 8.21 25.60 0.21 -29.75 15 5 H 0.05 3.02 7.71 -2.91 -0.02 3.00 15 6 C 0.01 0.61 5.30 84.66 0.45 1.06 15 7 N -0.92 -54.26 11.39 21.45 0.24 -54.01 15 8 Si 0.96 44.80 29.54 68.60 2.03 46.82 15 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 12 N -0.49 -20.93 5.97 -883.83 -5.28 -26.21 15 13 C 0.02 0.77 6.70 86.41 0.58 1.35 15 14 C -0.15 -4.21 4.24 -10.15 -0.04 -4.26 15 15 C 0.26 6.35 5.31 71.98 0.38 6.73 15 16 F -0.22 -7.19 15.74 44.97 0.71 -6.48 15 17 F -0.22 -5.85 17.28 44.97 0.78 -5.08 15 18 C 0.01 0.33 6.62 86.36 0.57 0.91 15 19 H 0.03 1.49 8.14 -2.39 -0.02 1.47 15 20 H 0.06 3.09 6.25 -2.38 -0.01 3.08 15 21 H 0.03 1.42 7.51 -2.39 -0.02 1.41 15 22 H 0.26 14.62 8.31 -92.70 -0.77 13.85 15 23 H 0.08 3.12 8.14 -2.39 -0.02 3.10 15 24 H 0.04 1.93 7.42 -2.39 -0.02 1.91 15 25 H 0.15 3.22 8.14 -2.38 -0.02 3.20 15 26 H 0.16 2.22 8.14 -2.39 -0.02 2.20 15 27 H 0.06 2.10 6.87 -2.39 -0.02 2.08 15 28 H 0.11 3.00 8.14 -2.39 -0.02 2.98 15 Total: -1.00 -65.52 240.80 2.49 -63.02 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: 1.15 Total: 1.23 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 2.87 Total: -19.30 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -5.04 Total: -80.22 kcal Atomic # 9 Polarization: -13.04 SS G_CDS: 1.49 Total: -11.56 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -65.52 2.49 -63.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707084313.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.791 kcal (2) G-P(sol) polarization free energy of solvation -65.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds