Wall clock time and date at job start Mon Mar 30 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38437 * 120.34040 * 2 1 4 4 N 1.31951 * 121.10761 * 180.02562 * 3 2 1 5 5 C 1.31662 * 121.88716 * 359.97438 * 4 3 2 6 6 C 1.39707 * 120.54746 * 0.02562 * 5 4 3 7 7 C 1.47817 * 120.57361 * 179.97438 * 6 5 4 8 8 O 1.21757 * 120.00289 * 174.27435 * 7 6 5 9 9 C 1.41821 * 119.99853 * 354.27516 * 7 6 5 10 10 H 1.07994 * 120.00055 * 10.87050 * 9 7 6 11 11 C 1.40347 * 120.00013 * 190.87327 * 9 7 6 12 12 N 1.30536 * 119.99837 * 351.92014 * 11 9 7 13 13 Si 1.86795 * 120.00311 * 171.92260 * 11 9 7 14 14 H 1.48496 * 109.47319 * 94.96067 * 13 11 9 15 15 H 1.48496 * 109.47477 * 214.96650 * 13 11 9 16 16 H 1.48504 * 109.46929 * 334.96139 * 13 11 9 17 17 C 1.38286 * 120.34081 * 180.02562 * 2 1 3 18 18 C 1.50694 * 120.85833 * 0.25231 * 17 2 1 19 19 H 1.08998 * 109.47050 * 269.95660 * 1 2 3 20 20 H 1.09001 * 109.46607 * 29.95423 * 1 2 3 21 21 H 1.08992 * 109.47142 * 149.95783 * 1 2 3 22 22 H 1.08003 * 119.44483 * 359.97438 * 3 2 1 23 23 H 1.08005 * 119.72644 * 180.02562 * 5 4 3 24 24 H 0.96999 * 119.99844 * 179.97438 * 12 11 9 25 25 H 1.09002 * 109.46807 * 263.24486 * 18 17 2 26 26 H 1.09000 * 109.47440 * 23.24394 * 18 17 2 27 27 H 1.08998 * 109.47300 * 143.24820 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2064 1.1948 0.0000 4 7 3.5257 1.2124 -0.0005 5 6 4.2362 0.1039 -0.0005 6 6 3.6063 -1.1431 -0.0006 7 6 4.4033 -2.3880 -0.0011 8 8 3.8480 -3.4665 0.1040 9 6 5.8148 -2.3262 -0.1242 10 1 6.3230 -1.3770 -0.0412 11 6 6.5512 -3.4987 -0.3540 12 7 5.9609 -4.6616 -0.2978 13 14 8.3758 -3.3951 -0.7403 14 1 9.1573 -3.5712 0.5101 15 1 8.7389 -4.4635 -1.7055 16 1 8.6818 -2.0681 -1.3325 17 6 2.2056 -1.1935 -0.0005 18 6 1.4796 -2.5140 -0.0068 19 1 -0.3633 -0.0008 1.0276 20 1 -0.3632 0.8904 -0.5131 21 1 -0.3633 -0.8895 -0.5144 22 1 1.6628 2.1281 -0.0004 23 1 5.3148 0.1591 -0.0005 24 1 6.4698 -5.4719 -0.4569 25 1 1.4066 -2.8933 1.0125 26 1 0.4787 -2.3764 -0.4158 27 1 2.0284 -3.2274 -0.6215 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709897998.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:25 Heat of formation + Delta-G solvation = -19.470274 kcal Electronic energy + Delta-G solvation = -12825.507475 eV Core-core repulsion = 10547.877507 eV Total energy + Delta-G solvation = -2277.629968 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.64868 -36.57468 -33.90261 -32.77903 -31.37592 -28.38765 -26.44328 -26.24974 -22.92407 -20.83865 -19.61451 -16.72061 -15.85853 -15.62163 -15.27160 -14.11915 -14.02561 -13.08488 -12.95185 -12.61512 -12.45494 -12.04462 -11.89776 -11.69657 -11.58307 -11.13596 -11.05281 -10.89705 -10.46590 -10.38672 -9.05734 -8.82223 -8.55955 -8.10562 -7.44120 -6.38584 -4.97658 1.64545 1.94558 3.01349 3.10102 3.14336 3.95470 4.06587 4.59209 5.07668 5.25678 5.37067 5.56517 5.60974 5.65796 5.80347 6.01252 6.10521 6.20477 6.38413 6.49720 6.55825 6.79139 6.91604 7.14281 7.25224 7.49439 7.96541 8.62822 8.71123 8.72989 10.20375 10.41328 Molecular weight = 205.08amu Principal moments of inertia in cm(-1) A = 0.050006 B = 0.009942 C = 0.008383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.799282 B = 2815.637334 C = 3339.483439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.161 4.161 3 C 0.082 3.918 4 N -0.502 5.502 5 C 0.112 3.888 6 C -0.154 4.154 7 C 0.391 3.609 8 O -0.532 6.532 9 C -0.516 4.516 10 H 0.075 0.925 11 C 0.081 3.919 12 N -0.735 5.735 13 Si 0.907 3.093 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.259 1.259 17 C -0.020 4.020 18 C -0.113 4.113 19 H 0.065 0.935 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.142 0.858 23 H 0.161 0.839 24 H 0.275 0.725 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.857 5.678 -0.442 7.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.163 4.163 3 C -0.075 4.075 4 N -0.211 5.211 5 C -0.044 4.044 6 C -0.157 4.157 7 C 0.287 3.713 8 O -0.422 6.422 9 C -0.547 4.547 10 H 0.093 0.907 11 C -0.143 4.143 12 N -0.363 5.363 13 Si 0.731 3.269 14 H -0.194 1.194 15 H -0.201 1.201 16 H -0.183 1.183 17 C -0.028 4.028 18 C -0.169 4.169 19 H 0.084 0.916 20 H 0.080 0.920 21 H 0.087 0.913 22 H 0.160 0.840 23 H 0.178 0.822 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.727 5.783 -0.402 7.480 hybrid contribution 0.541 -0.509 -0.174 0.763 sum -4.186 5.274 -0.576 6.758 Atomic orbital electron populations 1.20681 0.91178 1.02420 1.01899 1.20676 0.96863 0.94001 1.04776 1.22464 0.90345 0.96569 0.98124 1.67572 1.07720 1.32219 1.13543 1.23160 1.00328 0.86860 0.94094 1.22745 0.94253 0.99632 0.99042 1.18007 0.88713 0.85073 0.79506 1.90434 1.73260 1.29902 1.48599 1.20914 0.93308 0.94549 1.45947 0.90655 1.25982 1.00489 0.94750 0.93052 1.69948 1.37322 0.98449 1.30560 0.86338 0.82127 0.79373 0.79095 1.19407 1.20055 1.18295 1.20469 0.93380 0.95251 0.93689 1.20997 0.97975 0.94465 1.03495 0.91631 0.91992 0.91256 0.84028 0.82221 0.91382 0.91182 0.93314 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.65 36.01 0.35 -1.04 15 2 C -0.16 -2.88 5.89 -104.53 -0.62 -3.49 15 3 C 0.08 1.46 10.85 -17.43 -0.19 1.27 15 4 N -0.50 -10.17 10.34 -12.84 -0.13 -10.30 15 5 C 0.11 2.45 10.62 -17.08 -0.18 2.26 15 6 C -0.15 -3.66 5.90 -104.71 -0.62 -4.28 15 7 C 0.39 10.79 6.85 -34.30 -0.23 10.55 15 8 O -0.53 -15.94 12.13 5.14 0.06 -15.88 15 9 C -0.52 -13.87 8.84 -37.42 -0.33 -14.20 15 10 H 0.08 1.84 6.12 -52.49 -0.32 1.52 15 11 C 0.08 2.12 5.49 -17.31 -0.10 2.02 15 12 N -0.73 -20.47 11.79 55.57 0.66 -19.82 15 13 Si 0.91 18.88 29.57 -169.99 -5.03 13.86 15 14 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 15 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 16 H -0.26 -5.26 7.11 56.52 0.40 -4.85 15 17 C -0.02 -0.43 5.95 -103.89 -0.62 -1.04 15 18 C -0.11 -2.27 8.54 36.00 0.31 -1.96 15 19 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 20 H 0.06 0.69 8.09 -51.93 -0.42 0.27 15 21 H 0.07 0.89 6.00 -51.93 -0.31 0.58 15 22 H 0.14 2.00 8.06 -52.48 -0.42 1.58 15 23 H 0.16 3.30 6.27 -52.48 -0.33 2.97 15 24 H 0.28 6.87 8.29 -40.82 -0.34 6.54 15 25 H 0.07 1.41 8.14 -51.93 -0.42 0.98 15 26 H 0.05 0.79 5.85 -51.93 -0.30 0.49 15 27 H 0.10 2.37 5.98 -51.93 -0.31 2.05 15 LS Contribution 234.67 15.07 3.54 3.54 Total: -1.00 -30.76 234.67 -5.53 -36.29 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -2.40 Total: 2.21 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -2.23 Total: -9.91 kcal Atomic # 7 Polarization: -30.64 SS G_CDS: 0.52 Total: -30.11 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.06 Total: -15.88 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.76 -5.53 -36.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709897998.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.823 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds