Wall clock time and date at job start Mon Mar 30 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38437 * 120.34040 * 2 1 4 4 N 1.31951 * 121.10761 * 180.02562 * 3 2 1 5 5 C 1.31662 * 121.88716 * 359.97438 * 4 3 2 6 6 C 1.39707 * 120.54746 * 0.02562 * 5 4 3 7 7 C 1.47817 * 120.57361 * 179.97438 * 6 5 4 8 8 O 1.21757 * 120.00289 * 174.27435 * 7 6 5 9 9 C 1.41821 * 119.99853 * 354.27516 * 7 6 5 10 10 H 1.07994 * 120.00055 * 10.87050 * 9 7 6 11 11 C 1.40347 * 120.00013 * 190.87327 * 9 7 6 12 12 N 1.30536 * 119.99837 * 351.92014 * 11 9 7 13 13 Si 1.86795 * 120.00311 * 171.92260 * 11 9 7 14 14 H 1.48496 * 109.47319 * 94.96067 * 13 11 9 15 15 H 1.48496 * 109.47477 * 214.96650 * 13 11 9 16 16 H 1.48504 * 109.46929 * 334.96139 * 13 11 9 17 17 C 1.38286 * 120.34081 * 180.02562 * 2 1 3 18 18 C 1.50694 * 120.85833 * 0.25231 * 17 2 1 19 19 H 1.08998 * 109.47050 * 269.95660 * 1 2 3 20 20 H 1.09001 * 109.46607 * 29.95423 * 1 2 3 21 21 H 1.08992 * 109.47142 * 149.95783 * 1 2 3 22 22 H 1.08003 * 119.44483 * 359.97438 * 3 2 1 23 23 H 1.08005 * 119.72644 * 180.02562 * 5 4 3 24 24 H 0.96999 * 119.99844 * 179.97438 * 12 11 9 25 25 H 1.09002 * 109.46807 * 263.24486 * 18 17 2 26 26 H 1.09000 * 109.47440 * 23.24394 * 18 17 2 27 27 H 1.08998 * 109.47300 * 143.24820 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2064 1.1948 0.0000 4 7 3.5257 1.2124 -0.0005 5 6 4.2362 0.1039 -0.0005 6 6 3.6063 -1.1431 -0.0006 7 6 4.4033 -2.3880 -0.0011 8 8 3.8480 -3.4665 0.1040 9 6 5.8148 -2.3262 -0.1242 10 1 6.3230 -1.3770 -0.0412 11 6 6.5512 -3.4987 -0.3540 12 7 5.9609 -4.6616 -0.2978 13 14 8.3758 -3.3951 -0.7403 14 1 9.1573 -3.5712 0.5101 15 1 8.7389 -4.4635 -1.7055 16 1 8.6818 -2.0681 -1.3325 17 6 2.2056 -1.1935 -0.0005 18 6 1.4796 -2.5140 -0.0068 19 1 -0.3633 -0.0008 1.0276 20 1 -0.3632 0.8904 -0.5131 21 1 -0.3633 -0.8895 -0.5144 22 1 1.6628 2.1281 -0.0004 23 1 5.3148 0.1591 -0.0005 24 1 6.4698 -5.4719 -0.4569 25 1 1.4066 -2.8933 1.0125 26 1 0.4787 -2.3764 -0.4158 27 1 2.0284 -3.2274 -0.6215 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709897998.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:25 Heat of formation + Delta-G solvation = -39.514729 kcal Electronic energy + Delta-G solvation = -12826.376667 eV Core-core repulsion = 10547.877507 eV Total energy + Delta-G solvation = -2278.499161 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.24374 -38.56533 -35.45145 -34.72691 -33.03802 -30.08889 -28.11454 -27.80296 -24.63472 -22.39236 -21.45672 -18.61276 -17.61897 -17.23145 -16.94933 -15.77909 -15.63066 -14.87167 -14.45564 -14.20483 -13.86780 -13.59765 -13.57645 -13.35294 -13.19352 -12.72793 -12.54008 -12.53107 -12.43872 -12.03261 -11.00659 -10.41982 -10.18958 -9.67427 -9.46477 -8.36619 -7.08388 0.02687 0.35355 1.36873 1.38357 1.54990 2.19591 2.22875 2.86817 3.59476 3.63588 3.90490 4.00286 4.04605 4.13795 4.55763 4.64115 4.75022 4.81347 4.92006 4.95681 5.17057 5.18974 5.21204 5.40947 5.61266 5.92661 5.95665 6.67636 6.72164 7.06493 8.19047 8.43851 Molecular weight = 205.08amu Principal moments of inertia in cm(-1) A = 0.050006 B = 0.009942 C = 0.008383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.799282 B = 2815.637334 C = 3339.483439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.150 4.150 3 C 0.090 3.910 4 N -0.509 5.509 5 C 0.107 3.893 6 C -0.193 4.193 7 C 0.370 3.630 8 O -0.573 6.573 9 C -0.546 4.546 10 H 0.091 0.909 11 C 0.028 3.972 12 N -0.784 5.784 13 Si 0.992 3.008 14 H -0.259 1.259 15 H -0.267 1.267 16 H -0.248 1.248 17 C -0.039 4.039 18 C -0.104 4.104 19 H 0.083 0.917 20 H 0.094 0.906 21 H 0.073 0.927 22 H 0.190 0.810 23 H 0.160 0.840 24 H 0.283 0.717 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 7.848 -0.728 9.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.152 4.152 3 C -0.067 4.067 4 N -0.218 5.218 5 C -0.049 4.049 6 C -0.196 4.196 7 C 0.269 3.731 8 O -0.466 6.466 9 C -0.576 4.576 10 H 0.109 0.891 11 C -0.191 4.191 12 N -0.413 5.413 13 Si 0.811 3.189 14 H -0.183 1.183 15 H -0.192 1.192 16 H -0.171 1.171 17 C -0.047 4.047 18 C -0.160 4.160 19 H 0.102 0.898 20 H 0.112 0.888 21 H 0.092 0.908 22 H 0.207 0.793 23 H 0.177 0.823 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.361 7.971 -0.684 9.630 hybrid contribution 0.584 -1.096 -0.064 1.243 sum -4.777 6.875 -0.748 8.405 Atomic orbital electron populations 1.20803 0.87282 1.04274 1.03570 1.21147 0.99497 0.92395 1.02165 1.23300 0.89619 0.98487 0.95270 1.67650 1.09168 1.31076 1.13891 1.23078 1.00607 0.86684 0.94547 1.22483 0.95606 0.98715 1.02765 1.18598 0.89789 0.86048 0.78682 1.90394 1.74113 1.31681 1.50420 1.21407 0.93852 0.95844 1.46547 0.89099 1.27171 1.06164 0.93823 0.91940 1.70068 1.39978 0.99633 1.31610 0.85072 0.74661 0.79919 0.79264 1.18310 1.19166 1.17113 1.20740 0.92735 0.97052 0.94170 1.20847 0.99416 0.93305 1.02401 0.89821 0.88753 0.90838 0.79281 0.82275 0.90617 0.92042 0.89252 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.23 9.65 71.24 0.69 -1.54 15 2 C -0.15 -4.92 5.89 -19.80 -0.12 -5.03 15 3 C 0.09 2.88 10.85 84.72 0.92 3.80 15 4 N -0.51 -19.67 10.34 -194.54 -2.01 -21.68 15 5 C 0.11 4.68 10.62 85.07 0.90 5.59 15 6 C -0.19 -9.44 5.90 -19.92 -0.12 -9.55 15 7 C 0.37 21.50 6.85 25.69 0.18 21.67 15 8 O -0.57 -36.52 12.13 -4.53 -0.05 -36.57 15 9 C -0.55 -30.42 8.84 23.67 0.21 -30.21 15 10 H 0.09 4.57 6.12 -2.91 -0.02 4.55 15 11 C 0.03 1.52 5.49 85.40 0.47 1.99 15 12 N -0.78 -45.48 11.79 21.89 0.26 -45.22 15 13 Si 0.99 39.07 29.57 68.60 2.03 41.10 15 14 H -0.26 -9.69 7.11 99.48 0.71 -8.99 15 15 H -0.27 -10.06 7.11 99.48 0.71 -9.35 15 16 H -0.25 -9.22 7.11 99.48 0.71 -8.51 15 17 C -0.04 -1.66 5.95 -19.39 -0.12 -1.77 15 18 C -0.10 -4.22 8.54 71.23 0.61 -3.61 15 19 H 0.08 1.61 8.14 -2.39 -0.02 1.59 15 20 H 0.09 1.51 8.09 -2.39 -0.02 1.49 15 21 H 0.07 1.57 6.00 -2.39 -0.01 1.56 15 22 H 0.19 4.21 8.06 -2.91 -0.02 4.19 15 23 H 0.16 6.73 6.27 -2.91 -0.02 6.71 15 24 H 0.28 14.66 8.29 -92.71 -0.77 13.89 15 25 H 0.06 2.54 8.14 -2.39 -0.02 2.53 15 26 H 0.09 2.79 5.85 -2.39 -0.01 2.77 15 27 H 0.06 3.03 5.98 -2.39 -0.01 3.02 15 Total: -1.00 -70.64 234.67 5.03 -65.61 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 1.19 Total: 15.44 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 3.62 Total: -18.67 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -1.75 Total: -66.90 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.05 Total: -36.57 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -70.64 5.03 -65.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709897998.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.095 kcal (2) G-P(sol) polarization free energy of solvation -70.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds