Wall clock time and date at job start Mon Mar 30 2020 02:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 9 7 12 12 C 1.47850 * 110.99896 * 49.15872 * 11 10 9 13 13 C 1.54902 * 104.79705 * 146.36522 * 12 11 10 14 14 H 1.09003 * 110.99389 * 81.02444 * 13 12 11 15 15 F 1.39902 * 111.02130 * 204.82268 * 13 12 11 16 16 C 1.55138 * 101.65405 * 322.92636 * 13 12 11 17 17 H 1.08995 * 110.71040 * 277.27120 * 16 13 12 18 18 F 1.39906 * 110.70565 * 154.03629 * 16 13 12 19 19 C 1.47440 * 111.00292 * 170.00127 * 11 10 9 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.09001 * 110.37321 * 265.19617 * 12 11 10 26 26 H 1.09005 * 110.37479 * 27.53322 * 12 11 10 27 27 H 1.09002 * 109.89316 * 356.14658 * 19 11 10 28 28 H 1.08998 * 109.89126 * 117.34101 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 0.4636 -4.9421 -1.0427 13 6 0.3979 -6.4123 -1.5261 14 1 -0.1991 -7.0205 -0.8466 15 9 -0.0992 -6.4896 -2.8316 16 6 1.8923 -6.8260 -1.4751 17 1 2.4129 -6.5019 -2.3762 18 9 2.0171 -8.2085 -1.3003 19 6 2.4203 -6.0697 -0.2378 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 -0.4946 -4.6380 -0.6214 26 1 0.7432 -4.2841 -1.8656 27 1 3.4287 -5.7031 -0.4299 28 1 2.4227 -6.7316 0.6282 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714562047.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:03 Heat of formation + Delta-G solvation = -123.102075 kcal Electronic energy + Delta-G solvation = -13448.049149 eV Core-core repulsion = 10747.528934 eV Total energy + Delta-G solvation = -2700.520215 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.18761 -48.45298 -39.71333 -35.47469 -33.15753 -30.21430 -29.51783 -26.24961 -23.66801 -22.51239 -21.55466 -18.64810 -18.43497 -17.67339 -16.56735 -16.51837 -16.34531 -16.07990 -15.64792 -15.21481 -14.54943 -14.38594 -14.13489 -13.75204 -13.59966 -13.15047 -12.80936 -12.45920 -12.33367 -12.00235 -11.90966 -11.58095 -11.30105 -11.27207 -10.55788 -9.39950 -8.20631 -6.31812 1.41590 1.43987 1.51881 2.39810 2.72474 2.88438 3.08512 3.13749 3.20489 3.63515 3.80721 4.11095 4.20670 4.39733 4.48541 4.54879 4.74326 4.78425 4.96555 5.03066 5.42499 5.57547 5.74345 5.85462 6.00678 6.25103 6.84765 7.37621 8.91129 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.062278 B = 0.007046 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.487830 B = 3972.753823 C = 4226.361547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.027 3.973 10 C 0.070 3.930 11 N -0.531 5.531 12 C 0.026 3.974 13 C 0.062 3.938 14 H 0.128 0.872 15 F -0.207 7.207 16 C 0.054 3.946 17 H 0.115 0.885 18 F -0.201 7.201 19 C 0.021 3.979 20 H 0.264 0.736 21 H -0.005 1.005 22 H 0.000 1.000 23 H 0.033 0.967 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.018 -11.805 -2.378 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.057 4.057 11 N -0.255 5.255 12 C -0.102 4.102 13 C 0.024 3.976 14 H 0.146 0.854 15 F -0.188 7.188 16 C 0.017 3.983 17 H 0.133 0.867 18 F -0.182 7.182 19 C -0.107 4.107 20 H 0.072 0.928 21 H 0.014 0.986 22 H 0.019 0.981 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.647 -11.778 -1.908 12.477 hybrid contribution 0.367 1.075 -0.835 1.410 sum 4.014 -10.703 -2.743 11.755 Atomic orbital electron populations 1.70088 1.07804 1.27869 1.51323 1.25931 0.95707 1.03270 0.94618 0.85510 0.78258 0.78130 0.79197 1.19187 1.21038 1.19114 1.21584 0.93633 0.92152 1.51055 0.91925 1.19056 0.94381 0.92120 0.95523 1.22305 0.95790 0.87495 1.00120 1.63679 1.12717 1.03702 1.45439 1.23421 0.98060 0.94296 0.94410 1.23387 0.95201 0.98618 0.80347 0.85384 1.92812 1.89095 1.97339 1.39522 1.23383 0.96471 0.76603 1.01892 0.86720 1.92827 1.96845 1.31641 1.96880 1.23487 0.97012 0.93167 0.97015 0.92758 0.98636 0.98146 0.94829 0.90755 0.89334 0.92794 0.89539 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.29 21.45 0.28 -55.59 15 2 C 0.00 0.17 5.46 84.66 0.46 0.63 15 3 Si 0.96 43.38 29.54 68.60 2.03 45.40 15 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 7 C -0.55 -30.19 9.11 25.60 0.23 -29.96 15 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 15 9 C 0.03 1.35 4.64 29.85 0.14 1.49 15 10 C 0.07 2.75 4.76 86.30 0.41 3.16 15 11 N -0.53 -17.63 5.31 -885.54 -4.71 -22.33 15 12 C 0.03 0.86 5.11 86.77 0.44 1.31 15 13 C 0.06 1.62 4.65 31.98 0.15 1.77 15 14 H 0.13 2.95 8.14 -2.39 -0.02 2.93 15 15 F -0.21 -6.02 17.24 44.97 0.78 -5.25 15 16 C 0.05 1.29 4.56 31.78 0.14 1.43 15 17 H 0.12 2.50 8.14 -2.39 -0.02 2.48 15 18 F -0.20 -4.97 17.18 44.97 0.77 -4.20 15 19 C 0.02 0.53 6.70 86.65 0.58 1.11 15 20 H 0.26 14.93 8.31 -92.71 -0.77 14.16 15 21 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 15 22 H 0.00 0.01 6.48 -2.39 -0.02 0.00 15 23 H 0.03 1.26 7.96 -2.39 -0.02 1.25 15 24 H 0.07 2.85 8.14 -2.39 -0.02 2.83 15 25 H 0.09 3.07 8.14 -2.39 -0.02 3.05 15 26 H 0.05 1.94 7.02 -2.38 -0.02 1.92 15 27 H 0.09 1.97 7.49 -2.39 -0.02 1.96 15 28 H 0.11 2.40 8.10 -2.39 -0.02 2.38 15 Total: -1.00 -61.44 242.69 2.86 -58.58 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 1.14 Total: 2.43 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 2.56 Total: -19.05 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -4.42 Total: -77.92 kcal Atomic # 9 Polarization: -10.99 SS G_CDS: 1.55 Total: -9.45 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -61.44 2.86 -58.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714562047.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.518 kcal (2) G-P(sol) polarization free energy of solvation -61.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds