Wall clock time and date at job start Mon Mar 30 2020 02:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 109.47003 * 2 1 4 4 C 1.50697 * 109.47251 * 119.99371 * 2 1 3 5 5 H 1.08006 * 120.00101 * 119.99695 * 4 2 1 6 6 C 1.37878 * 120.00210 * 300.00686 * 4 2 1 7 7 N 1.31511 * 120.00077 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47276 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47275 * 119.99459 * 8 6 4 11 11 H 1.48496 * 109.47307 * 239.99765 * 8 6 4 12 12 N 1.46895 * 109.47332 * 240.00083 * 2 1 3 13 13 C 1.46903 * 111.00260 * 85.00133 * 12 2 1 14 14 C 1.53001 * 109.46784 * 180.02562 * 13 12 2 15 15 H 1.08997 * 115.55450 * 29.32833 * 14 13 12 16 16 C 1.53006 * 117.49513 * 174.99539 * 14 13 12 17 17 C 1.52997 * 117.51528 * 243.62107 * 14 13 12 18 18 F 1.39903 * 117.49597 * 145.03295 * 17 14 13 19 19 F 1.39898 * 117.50066 * 0.02562 * 17 14 13 20 20 H 1.08999 * 109.47050 * 60.00195 * 1 2 3 21 21 H 1.09002 * 109.47196 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47533 * 300.00545 * 1 2 3 23 23 H 0.96999 * 120.00023 * 179.97438 * 7 6 4 24 24 H 1.00907 * 110.99920 * 208.94998 * 12 2 1 25 25 H 1.08989 * 109.47315 * 59.99967 * 13 12 2 26 26 H 1.09003 * 109.46818 * 299.99840 * 13 12 2 27 27 H 1.08990 * 117.50086 * 215.00010 * 16 14 13 28 28 H 1.09004 * 117.49623 * 0.02893 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1200 4.0080 9 1 3.1455 -2.2874 3.6039 10 1 3.1466 -0.1870 4.8165 11 1 1.1661 -1.5864 4.8161 12 7 2.0197 -0.6924 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5952 -0.5332 -3.5744 15 1 2.3629 -1.5978 -3.6019 16 6 2.6219 0.2186 -4.9067 17 6 3.9299 -0.0857 -4.1736 18 9 4.7588 -1.0742 -4.7149 19 9 4.5888 0.9833 -3.5569 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 0.7087 1.1615 3.4844 24 1 2.9174 -1.1204 -1.0287 25 1 2.7588 1.0462 -2.1182 26 1 1.0871 0.6163 -2.5525 27 1 2.4072 -0.3513 -5.8106 28 1 2.2746 1.2519 -4.9085 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717372076.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:55 Heat of formation + Delta-G solvation = -75.968933 kcal Electronic energy + Delta-G solvation = -13303.576176 eV Core-core repulsion = 10605.099807 eV Total energy + Delta-G solvation = -2698.476369 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.52564 -47.20882 -37.17972 -35.08501 -32.29421 -28.84472 -25.52114 -24.53897 -22.50024 -20.70538 -19.83144 -17.69344 -16.71863 -16.25041 -15.79017 -14.94533 -14.29677 -14.01006 -13.85063 -13.46701 -13.30117 -13.07588 -12.59214 -12.17980 -11.70601 -11.17706 -10.93043 -10.88675 -10.68614 -10.27934 -10.16971 -9.97191 -9.63485 -8.84313 -8.49820 -7.36362 -6.04417 -4.10851 3.11898 3.25788 3.28571 3.36359 3.40854 4.24085 4.42265 4.47649 4.73495 5.26902 5.34623 5.45772 5.52816 5.76866 5.84874 6.12109 6.33372 6.84254 7.10280 7.18662 7.45447 7.76285 7.85872 8.23648 8.32551 8.61182 8.98799 9.55279 11.02110 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.050339 B = 0.007299 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.098518 B = 3835.114652 C = 4089.084110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.210 3.790 3 H 0.002 0.998 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.687 5.687 13 C 0.082 3.918 14 C -0.132 4.132 15 H 0.136 0.864 16 C -0.175 4.175 17 C 0.182 3.818 18 F -0.167 7.167 19 F -0.160 7.160 20 H 0.004 0.996 21 H 0.032 0.968 22 H 0.081 0.919 23 H 0.261 0.739 24 H 0.332 0.668 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.464 -0.700 -12.006 12.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.020 0.980 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.318 5.318 13 C -0.048 4.048 14 C -0.152 4.152 15 H 0.154 0.846 16 C -0.213 4.213 17 C 0.146 3.854 18 F -0.147 7.147 19 F -0.141 7.141 20 H 0.023 0.977 21 H 0.051 0.949 22 H 0.100 0.900 23 H 0.071 0.929 24 H 0.149 0.851 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.137 0.863 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.806 -0.819 -12.013 12.176 hybrid contribution 1.329 0.152 1.040 1.695 sum 3.135 -0.668 -10.973 11.431 Atomic orbital electron populations 1.21721 0.97745 0.99427 0.99412 1.19132 0.92696 0.92439 0.85453 0.98006 1.21291 1.31460 1.12558 0.90400 0.92102 1.24921 0.95016 0.94989 0.99094 1.69903 1.36672 1.22897 1.23413 0.86448 0.78605 0.79623 0.82776 1.19719 1.21076 1.20958 1.60779 1.32165 1.32819 1.06027 1.21517 1.00209 0.93809 0.89271 1.23898 0.93099 1.03030 0.95157 0.84637 1.24343 0.94991 1.04188 0.97809 1.20245 0.81594 0.81837 1.01762 1.92998 1.74785 1.60784 1.86152 1.93005 1.83073 1.54854 1.83160 0.97688 0.94871 0.90029 0.92947 0.85057 0.94805 0.90181 0.86256 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 9.19 37.16 0.34 -2.74 15 2 C 0.21 5.33 2.60 -68.87 -0.18 5.15 15 3 H 0.00 0.06 7.80 -51.92 -0.40 -0.34 15 4 C -0.52 -14.28 8.59 -34.44 -0.30 -14.57 15 5 H 0.06 1.66 7.62 -52.48 -0.40 1.26 15 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -25.45 11.32 55.43 0.63 -24.82 15 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 15 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 15 12 N -0.69 -14.54 6.30 -107.95 -0.68 -15.22 15 13 C 0.08 1.43 5.75 -3.82 -0.02 1.41 15 14 C -0.13 -1.85 5.93 -90.62 -0.54 -2.39 15 15 H 0.14 1.83 8.14 -51.93 -0.42 1.41 15 16 C -0.17 -1.91 10.22 -26.73 -0.27 -2.19 15 17 C 0.18 2.58 5.20 -26.73 -0.14 2.44 15 18 F -0.17 -2.45 17.60 2.25 0.04 -2.41 15 19 F -0.16 -2.60 16.48 2.25 0.04 -2.56 15 20 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 15 21 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.08 2.19 6.07 -51.93 -0.32 1.88 15 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 24 H 0.33 6.99 8.22 -39.29 -0.32 6.67 15 25 H 0.03 0.63 6.97 -51.94 -0.36 0.27 15 26 H 0.08 1.37 7.44 -51.93 -0.39 0.99 15 27 H 0.12 1.02 8.14 -51.93 -0.42 0.60 15 28 H 0.12 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 247.80 15.07 3.73 3.73 Total: -1.00 -28.69 247.80 -5.87 -34.56 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -3.40 Total: 1.69 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.20 Total: -11.27 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: -0.05 Total: -40.03 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.08 Total: -4.97 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.69 -5.87 -34.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717372076.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.413 kcal (2) G-P(sol) polarization free energy of solvation -28.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds