Wall clock time and date at job start Mon Mar 30 2020 02:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 109.47003 * 2 1 4 4 C 1.50697 * 109.47251 * 119.99371 * 2 1 3 5 5 H 1.08006 * 120.00101 * 119.99695 * 4 2 1 6 6 C 1.37878 * 120.00210 * 300.00686 * 4 2 1 7 7 N 1.31511 * 120.00077 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47276 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47275 * 119.99459 * 8 6 4 11 11 H 1.48496 * 109.47307 * 239.99765 * 8 6 4 12 12 N 1.46895 * 109.47332 * 240.00083 * 2 1 3 13 13 C 1.46903 * 111.00260 * 85.00133 * 12 2 1 14 14 C 1.53001 * 109.46784 * 180.02562 * 13 12 2 15 15 H 1.08997 * 115.55450 * 29.32833 * 14 13 12 16 16 C 1.53006 * 117.49513 * 174.99539 * 14 13 12 17 17 C 1.52997 * 117.51528 * 243.62107 * 14 13 12 18 18 F 1.39903 * 117.49597 * 145.03295 * 17 14 13 19 19 F 1.39898 * 117.50066 * 0.02562 * 17 14 13 20 20 H 1.08999 * 109.47050 * 60.00195 * 1 2 3 21 21 H 1.09002 * 109.47196 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47533 * 300.00545 * 1 2 3 23 23 H 0.96999 * 120.00023 * 179.97438 * 7 6 4 24 24 H 1.00907 * 110.99920 * 208.94998 * 12 2 1 25 25 H 1.08989 * 109.47315 * 59.99967 * 13 12 2 26 26 H 1.09003 * 109.46818 * 299.99840 * 13 12 2 27 27 H 1.08990 * 117.50086 * 215.00010 * 16 14 13 28 28 H 1.09004 * 117.49623 * 0.02893 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1200 4.0080 9 1 3.1455 -2.2874 3.6039 10 1 3.1466 -0.1870 4.8165 11 1 1.1661 -1.5864 4.8161 12 7 2.0197 -0.6924 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5952 -0.5332 -3.5744 15 1 2.3629 -1.5978 -3.6019 16 6 2.6219 0.2186 -4.9067 17 6 3.9299 -0.0857 -4.1736 18 9 4.7588 -1.0742 -4.7149 19 9 4.5888 0.9833 -3.5569 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 0.7087 1.1615 3.4844 24 1 2.9174 -1.1204 -1.0287 25 1 2.7588 1.0462 -2.1182 26 1 1.0871 0.6163 -2.5525 27 1 2.4072 -0.3513 -5.8106 28 1 2.2746 1.2519 -4.9085 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717372076.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:55 Heat of formation + Delta-G solvation = -94.360718 kcal Electronic energy + Delta-G solvation = -13304.373703 eV Core-core repulsion = 10605.099807 eV Total energy + Delta-G solvation = -2699.273897 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.65824 -48.35649 -38.55345 -36.70934 -34.22714 -30.67612 -27.47205 -26.22854 -23.50411 -21.95539 -21.75218 -18.93215 -18.44750 -17.60440 -16.93657 -16.88996 -15.93683 -15.63033 -15.04431 -14.77350 -14.59641 -14.35218 -14.20983 -13.81314 -13.30724 -12.91816 -12.68922 -12.67193 -12.21826 -12.18860 -12.03951 -11.64353 -10.88587 -10.77298 -10.58919 -9.14405 -8.15004 -6.29186 1.41117 1.42845 1.54735 2.08970 2.19712 2.40754 3.11070 3.15383 3.44828 3.66128 3.90542 4.22726 4.54057 4.63407 4.64973 4.85900 4.87642 5.05083 5.08148 5.20669 5.46948 5.65337 5.84859 6.21453 6.40659 6.71894 6.94537 7.41310 8.90968 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.050339 B = 0.007299 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.098518 B = 3835.114652 C = 4089.084110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.213 3.787 3 H -0.031 1.031 4 C -0.540 4.540 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.278 1.278 12 N -0.683 5.683 13 C 0.084 3.916 14 C -0.141 4.141 15 H 0.143 0.857 16 C -0.132 4.132 17 C 0.158 3.842 18 F -0.172 7.172 19 F -0.178 7.178 20 H 0.027 0.973 21 H 0.030 0.970 22 H 0.056 0.944 23 H 0.263 0.737 24 H 0.331 0.669 25 H 0.019 0.981 26 H 0.085 0.915 27 H 0.153 0.847 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 -1.324 -13.032 13.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 H -0.013 1.013 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.314 5.314 13 C -0.046 4.046 14 C -0.160 4.160 15 H 0.161 0.839 16 C -0.169 4.169 17 C 0.122 3.878 18 F -0.152 7.152 19 F -0.159 7.159 20 H 0.046 0.954 21 H 0.049 0.951 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.148 0.852 25 H 0.037 0.963 26 H 0.104 0.896 27 H 0.171 0.829 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.685 -1.448 -13.062 13.249 hybrid contribution 1.374 0.367 1.320 1.940 sum 3.059 -1.080 -11.741 12.181 Atomic orbital electron populations 1.21538 0.97235 0.99105 0.99296 1.18955 0.93099 0.90752 0.86770 1.01333 1.21623 1.31757 1.12750 0.91691 0.92331 1.25731 0.95132 0.95674 1.02060 1.70023 1.37428 1.24010 1.24188 0.85424 0.78146 0.78562 0.78984 1.19139 1.20687 1.20392 1.60704 1.32063 1.33093 1.05496 1.21512 1.00442 0.93261 0.89373 1.23729 0.93413 1.03428 0.95460 0.83924 1.24526 0.90447 1.05034 0.96935 1.20636 0.81916 0.81791 1.03465 1.92983 1.75072 1.61047 1.86136 1.92966 1.83532 1.55611 1.83771 0.95428 0.95091 0.92490 0.92772 0.85201 0.96276 0.89642 0.82865 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.60 9.19 71.98 0.66 -4.94 15 2 C 0.21 10.90 2.60 44.17 0.11 11.02 15 3 H -0.03 -1.76 7.80 -2.38 -0.02 -1.78 15 4 C -0.54 -29.97 8.59 25.60 0.22 -29.75 15 5 H 0.06 3.20 7.62 -2.91 -0.02 3.17 15 6 C 0.01 0.74 5.30 84.66 0.45 1.19 15 7 N -0.92 -52.98 11.32 21.45 0.24 -52.73 15 8 Si 0.96 43.70 29.54 68.60 2.03 45.72 15 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 12 N -0.68 -28.78 6.30 -495.46 -3.12 -31.90 15 13 C 0.08 2.86 5.75 86.30 0.50 3.35 15 14 C -0.14 -3.65 5.93 -10.79 -0.06 -3.71 15 15 H 0.14 3.52 8.14 -2.39 -0.02 3.50 15 16 C -0.13 -2.40 10.22 30.60 0.31 -2.08 15 17 C 0.16 4.21 5.20 30.59 0.16 4.37 15 18 F -0.17 -4.78 17.60 44.97 0.79 -3.99 15 19 F -0.18 -5.68 16.48 44.97 0.74 -4.93 15 20 H 0.03 1.18 7.45 -2.39 -0.02 1.16 15 21 H 0.03 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.06 3.09 6.07 -2.39 -0.01 3.08 15 23 H 0.26 14.35 8.31 -92.71 -0.77 13.58 15 24 H 0.33 13.97 8.22 -89.69 -0.74 13.23 15 25 H 0.02 0.71 6.97 -2.39 -0.02 0.70 15 26 H 0.09 2.80 7.44 -2.39 -0.02 2.78 15 27 H 0.15 1.83 8.14 -2.39 -0.02 1.81 15 28 H 0.14 2.11 8.14 -2.38 -0.02 2.09 15 Total: -1.00 -61.50 247.80 3.46 -58.05 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.43 Total: 10.33 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 2.35 Total: -20.55 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -2.88 Total: -84.63 kcal Atomic # 9 Polarization: -10.45 SS G_CDS: 1.53 Total: -8.92 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -61.50 3.46 -58.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717372076.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.313 kcal (2) G-P(sol) polarization free energy of solvation -61.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds