Wall clock time and date at job start Mon Mar 30 2020 02:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.52998 * 109.47303 * 179.97438 * 13 12 2 15 15 H 1.09003 * 115.55015 * 29.33524 * 14 13 12 16 16 C 1.53005 * 117.49793 * 174.99610 * 14 13 12 17 17 C 1.52999 * 117.50177 * 243.62166 * 14 13 12 18 18 F 1.39909 * 117.49461 * 359.97438 * 17 14 13 19 19 F 1.39893 * 117.50090 * 145.02102 * 17 14 13 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 24 24 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 25 25 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 26 26 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 27 27 H 1.08997 * 117.49906 * 214.97605 * 16 14 13 28 28 H 1.08997 * 117.49614 * 0.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5952 -0.5333 3.5744 15 1 3.2680 -1.3655 3.3670 16 6 2.8442 0.2757 4.8490 17 6 1.6458 -0.6720 4.7661 18 9 0.3754 -0.0974 4.6501 19 9 1.7072 -1.8574 5.5064 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 0.7093 1.1619 -3.4844 24 1 1.4496 -1.4980 1.4100 25 1 2.7589 1.0462 2.1181 26 1 1.0871 0.6162 2.5525 27 1 3.6804 -0.0246 5.4803 28 1 2.6424 1.3462 4.8131 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717372079.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:57 Heat of formation + Delta-G solvation = -74.960389 kcal Electronic energy + Delta-G solvation = -13318.490550 eV Core-core repulsion = 10620.057915 eV Total energy + Delta-G solvation = -2698.432635 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.54555 -47.23028 -37.22103 -35.15341 -32.28412 -28.82580 -25.24232 -24.62045 -22.51866 -20.71573 -20.19672 -17.72726 -16.68655 -16.14140 -15.81485 -14.75108 -14.52778 -13.94293 -13.67449 -13.49392 -13.32126 -13.14330 -12.75084 -11.91993 -11.64273 -11.44445 -10.96663 -10.85355 -10.69192 -10.49190 -10.15380 -9.90590 -9.64642 -9.00866 -8.37200 -7.31176 -5.99064 -4.02489 3.10786 3.24250 3.31865 3.39560 3.44946 4.23519 4.46768 4.46856 4.71804 5.32675 5.34267 5.44404 5.52097 5.75907 5.83976 6.10876 6.31966 6.69216 6.84539 7.08066 7.32568 7.73118 7.86892 8.24503 8.47961 8.57879 9.04828 9.62976 11.08133 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.064536 B = 0.006865 C = 0.006639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.761454 B = 4077.772784 C = 4216.214997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.210 3.790 3 H 0.034 0.966 4 C -0.495 4.495 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.682 5.682 13 C 0.081 3.919 14 C -0.132 4.132 15 H 0.136 0.864 16 C -0.174 4.174 17 C 0.181 3.819 18 F -0.161 7.161 19 F -0.167 7.167 20 H 0.006 0.994 21 H 0.028 0.972 22 H 0.090 0.910 23 H 0.259 0.741 24 H 0.327 0.673 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.119 0.881 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.202 -0.771 12.253 12.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.312 5.312 13 C -0.049 4.049 14 C -0.152 4.152 15 H 0.154 0.846 16 C -0.213 4.213 17 C 0.144 3.856 18 F -0.142 7.142 19 F -0.147 7.147 20 H 0.025 0.975 21 H 0.047 0.953 22 H 0.108 0.892 23 H 0.069 0.931 24 H 0.143 0.857 25 H 0.099 0.901 26 H 0.051 0.949 27 H 0.138 0.862 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.754 -0.589 11.954 12.281 hybrid contribution -0.955 -0.392 -0.470 1.134 sum 1.799 -0.980 11.484 11.666 Atomic orbital electron populations 1.22436 1.00574 0.99331 1.00583 1.19196 0.89727 0.94459 0.86329 0.94764 1.21188 1.30191 1.12463 0.89531 0.91825 1.24957 0.95322 0.95214 0.99089 1.69891 1.37355 1.23223 1.23276 0.86439 0.78496 0.79649 0.82792 1.19711 1.21218 1.21142 1.60858 1.58169 1.09003 1.03147 1.21513 0.99139 0.95517 0.88696 1.23910 0.98457 1.02431 0.90355 0.84581 1.24342 0.96945 0.99485 1.00498 1.20266 0.79467 0.84424 1.01404 1.93003 1.41286 1.83670 1.96208 1.92995 1.96329 1.47264 1.78128 0.97530 0.95270 0.89187 0.93102 0.85677 0.90070 0.94857 0.86234 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.94 37.16 0.33 -3.80 15 2 C 0.21 5.27 2.57 -68.87 -0.18 5.09 15 3 H 0.03 0.93 7.80 -51.93 -0.40 0.53 15 4 C -0.49 -13.67 8.84 -34.44 -0.30 -13.97 15 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 15 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 15 7 N -0.90 -25.67 11.32 55.43 0.63 -25.04 15 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 15 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 12 N -0.68 -14.30 6.23 -107.95 -0.67 -14.97 15 13 C 0.08 1.40 5.75 -3.83 -0.02 1.38 15 14 C -0.13 -1.83 5.93 -90.62 -0.54 -2.37 15 15 H 0.14 1.84 8.14 -51.93 -0.42 1.41 15 16 C -0.17 -1.89 10.22 -26.72 -0.27 -2.17 15 17 C 0.18 2.52 5.20 -26.73 -0.14 2.38 15 18 F -0.16 -2.55 16.47 2.25 0.04 -2.51 15 19 F -0.17 -2.41 17.60 2.25 0.04 -2.37 15 20 H 0.01 0.13 7.45 -51.93 -0.39 -0.26 15 21 H 0.03 0.68 8.13 -51.93 -0.42 0.26 15 22 H 0.09 2.42 6.07 -51.93 -0.32 2.10 15 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 24 H 0.33 6.63 8.47 -39.29 -0.33 6.30 15 25 H 0.08 1.39 8.06 -51.93 -0.42 0.97 15 26 H 0.03 0.60 6.35 -51.93 -0.33 0.27 15 27 H 0.12 1.02 8.14 -51.93 -0.42 0.60 15 28 H 0.12 1.16 8.14 -51.93 -0.42 0.74 15 LS Contribution 248.12 15.07 3.74 3.74 Total: -1.00 -28.66 248.12 -5.89 -34.55 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.42 Total: 2.22 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.22 Total: -12.03 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: -0.05 Total: -40.01 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.08 Total: -4.88 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.66 -5.89 -34.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717372079.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.413 kcal (2) G-P(sol) polarization free energy of solvation -28.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds