Wall clock time and date at job start Mon Mar 30 2020 02:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47501 * 2 1 4 4 C 1.50704 * 109.46963 * 239.99764 * 2 1 3 5 5 H 1.08003 * 120.00318 * 275.00126 * 4 2 1 6 6 C 1.37871 * 120.00080 * 95.00366 * 4 2 1 7 7 N 1.31516 * 120.00681 * 184.91339 * 6 4 2 8 8 Si 1.86805 * 119.99829 * 4.91518 * 6 4 2 9 9 H 1.48500 * 109.47344 * 84.83088 * 8 6 4 10 10 H 1.48501 * 109.47116 * 204.82880 * 8 6 4 11 11 H 1.48498 * 109.46969 * 324.82804 * 8 6 4 12 12 N 1.46900 * 109.47068 * 120.00298 * 2 1 3 13 13 C 1.46902 * 110.99695 * 274.99551 * 12 2 1 14 14 C 1.52998 * 109.47021 * 179.97438 * 13 12 2 15 15 H 1.08996 * 115.55011 * 29.33493 * 14 13 12 16 16 C 1.52999 * 117.49985 * 243.62165 * 14 13 12 17 17 C 1.52999 * 60.00365 * 252.51125 * 16 14 13 18 18 F 1.39895 * 117.50101 * 252.51026 * 17 16 14 19 19 F 1.39898 * 117.51894 * 107.47462 * 17 16 14 20 20 H 1.09005 * 109.47139 * 55.05096 * 1 2 3 21 21 H 1.08998 * 109.47637 * 175.05147 * 1 2 3 22 22 H 1.09002 * 109.47218 * 295.05544 * 1 2 3 23 23 H 0.96997 * 120.00678 * 179.97438 * 7 6 4 24 24 H 1.00902 * 111.00070 * 151.04581 * 12 2 1 25 25 H 1.09000 * 109.47449 * 300.00229 * 13 12 2 26 26 H 1.08997 * 109.47280 * 59.99864 * 13 12 2 27 27 H 1.08996 * 117.49713 * 0.02562 * 16 14 13 28 28 H 1.08994 * 117.50025 * 145.02205 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1354 -1.7856 -1.2291 6 6 2.3602 0.0119 -2.3580 7 7 2.7059 -0.6133 -3.4622 8 14 2.3136 1.8790 -2.3174 9 1 3.5991 2.3947 -1.7821 10 1 2.1059 2.3990 -3.6928 11 1 1.1986 2.3274 -1.4451 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2226 2.3468 14 6 2.5950 -0.5332 3.5744 15 1 3.2677 -1.3654 3.3671 16 6 1.6455 -0.6717 4.7661 17 6 2.8440 0.2758 4.8490 18 9 3.9172 -0.1096 5.6594 19 9 2.5861 1.6500 4.8025 20 1 -0.3634 0.5887 -0.8424 21 1 -0.3634 -1.0238 -0.0886 22 1 -0.3634 0.4352 0.9310 23 1 2.9363 -0.1050 -4.2556 24 1 2.9172 -1.1206 1.0287 25 1 2.7588 1.0462 2.1182 26 1 1.0871 0.6164 2.5525 27 1 0.6555 -0.2247 4.6754 28 1 1.6932 -1.5952 5.3430 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717372083.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:58 Heat of formation + Delta-G solvation = -95.425801 kcal Electronic energy + Delta-G solvation = -13293.886481 eV Core-core repulsion = 10594.566399 eV Total energy + Delta-G solvation = -2699.320082 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.65327 -48.34825 -38.62290 -36.69528 -34.29266 -31.30489 -27.43518 -26.25356 -23.48279 -21.99956 -21.58806 -19.20663 -18.63181 -17.67354 -17.01457 -16.71740 -15.89457 -15.50803 -15.08151 -14.98217 -14.61802 -14.55144 -14.49001 -13.93169 -13.48211 -12.96889 -12.88367 -12.62303 -12.31435 -12.22287 -11.85326 -11.66478 -11.05235 -10.84739 -10.73222 -9.14686 -8.32519 -6.38141 1.31236 1.33823 1.43680 2.05228 2.18524 2.30489 3.00438 3.21102 3.43807 3.60538 3.86310 4.20594 4.41521 4.53848 4.66505 4.69645 4.87228 4.89537 4.99428 5.00260 5.15435 5.50262 5.70096 6.00129 6.49354 6.65906 6.81160 7.31384 8.84024 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.049061 B = 0.007629 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.578030 B = 3669.432138 C = 3771.189849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.180 3.820 3 H 0.003 0.997 4 C -0.521 4.521 5 H 0.040 0.960 6 C 0.018 3.982 7 N -0.943 5.943 8 Si 0.937 3.063 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.247 1.247 12 N -0.679 5.679 13 C 0.084 3.916 14 C -0.142 4.142 15 H 0.138 0.862 16 C -0.137 4.137 17 C 0.169 3.831 18 F -0.172 7.172 19 F -0.174 7.174 20 H 0.036 0.964 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.267 0.733 24 H 0.339 0.661 25 H 0.023 0.977 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.056 3.018 16.126 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.071 3.929 3 H 0.021 0.979 4 C -0.560 4.560 5 H 0.059 0.941 6 C -0.180 4.180 7 N -0.583 5.583 8 Si 0.762 3.238 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.171 1.171 12 N -0.311 5.311 13 C -0.046 4.046 14 C -0.162 4.162 15 H 0.155 0.845 16 C -0.174 4.174 17 C 0.132 3.868 18 F -0.152 7.152 19 F -0.155 7.155 20 H 0.055 0.945 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.157 0.843 25 H 0.041 0.959 26 H 0.101 0.899 27 H 0.153 0.847 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.607 2.831 16.134 16.587 hybrid contribution 1.235 1.317 -0.696 1.935 sum -1.372 4.148 15.438 16.044 Atomic orbital electron populations 1.21753 0.96421 1.00618 0.99193 1.19491 0.93718 0.91959 0.87740 0.97929 1.21284 1.43331 0.94394 0.96977 0.94134 1.25846 0.94141 1.03194 0.94840 1.70035 1.47769 1.37912 1.02590 0.85889 0.79779 0.80494 0.77674 1.19644 1.21101 1.17054 1.60642 1.33065 1.32691 1.04668 1.21550 1.00434 0.93179 0.89426 1.23660 1.02686 1.00318 0.89514 0.84465 1.24554 0.94893 1.00087 0.97845 1.20499 0.91174 0.76571 0.98518 1.92988 1.57596 1.90169 1.74480 1.92978 1.93880 1.31764 1.96828 0.94534 0.93580 0.92999 0.92391 0.84288 0.95920 0.89906 0.84703 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.42 71.98 0.68 -4.27 15 2 C 0.18 8.08 2.26 44.17 0.10 8.18 15 3 H 0.00 0.14 4.95 -2.39 -0.01 0.13 15 4 C -0.52 -28.80 8.84 25.60 0.23 -28.58 15 5 H 0.04 2.50 8.06 -2.91 -0.02 2.48 15 6 C 0.02 1.03 5.47 84.65 0.46 1.50 15 7 N -0.94 -57.71 13.96 21.45 0.30 -57.41 15 8 Si 0.94 43.34 26.99 68.60 1.85 45.19 15 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 10 H -0.29 -13.01 7.11 99.48 0.71 -12.30 15 11 H -0.25 -10.61 6.82 99.48 0.68 -9.93 15 12 N -0.68 -25.82 6.30 -495.46 -3.12 -28.94 15 13 C 0.08 2.57 5.41 86.30 0.47 3.03 15 14 C -0.14 -3.45 5.94 -10.79 -0.06 -3.52 15 15 H 0.14 3.18 8.13 -2.39 -0.02 3.16 15 16 C -0.14 -2.47 10.15 30.59 0.31 -2.16 15 17 C 0.17 4.07 5.20 30.60 0.16 4.23 15 18 F -0.17 -4.40 17.60 44.97 0.79 -3.61 15 19 F -0.17 -4.76 17.14 44.97 0.77 -3.99 15 20 H 0.04 1.50 8.14 -2.38 -0.02 1.48 15 21 H 0.05 1.91 8.14 -2.39 -0.02 1.89 15 22 H 0.05 1.77 7.36 -2.39 -0.02 1.76 15 23 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 24 H 0.34 13.21 8.34 -89.69 -0.75 12.46 15 25 H 0.02 0.75 8.06 -2.39 -0.02 0.73 15 26 H 0.08 2.39 7.09 -2.39 -0.02 2.38 15 27 H 0.13 2.12 8.03 -2.39 -0.02 2.10 15 28 H 0.15 1.91 8.14 -2.39 -0.02 1.89 15 Total: -1.00 -62.40 248.46 3.32 -59.09 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.39 Total: 11.25 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 2.34 Total: -21.58 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.82 Total: -86.35 kcal Atomic # 9 Polarization: -9.16 SS G_CDS: 1.56 Total: -7.60 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.85 Total: 45.19 kcal Total: -62.40 3.32 -59.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717372083.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.339 kcal (2) G-P(sol) polarization free energy of solvation -62.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds