Wall clock time and date at job start Mon Mar 30 2020 02:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47083 * 174.63982 * 3 2 1 5 5 H 1.48496 * 109.46866 * 294.64129 * 3 2 1 6 6 H 1.48499 * 109.46822 * 54.63997 * 3 2 1 7 7 C 1.37883 * 120.00310 * 180.02562 * 2 1 3 8 8 C 1.51265 * 120.84979 * 164.56801 * 7 2 1 9 9 C 1.53231 * 108.53191 * 231.32285 * 8 7 2 10 10 C 1.52952 * 109.40902 * 305.37018 * 9 8 7 11 11 H 1.08995 * 109.35795 * 303.53500 * 10 9 8 12 12 N 1.46500 * 109.41708 * 183.70343 * 10 9 8 13 13 C 1.36340 * 125.63737 * 299.34226 * 12 10 9 14 14 C 1.34847 * 108.21855 * 180.26032 * 13 12 10 15 15 C 1.40886 * 107.41515 * 0.02562 * 14 13 12 16 16 C 1.34848 * 107.42383 * 359.97438 * 15 14 13 17 17 C 1.52967 * 109.81304 * 63.59677 * 10 9 8 18 18 C 1.51271 * 120.84463 * 344.54000 * 7 2 1 19 19 H 0.96996 * 120.00723 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.62717 * 351.03338 * 8 7 2 21 21 H 1.08994 * 109.62562 * 111.60987 * 8 7 2 22 22 H 1.09008 * 109.48231 * 185.38947 * 9 8 7 23 23 H 1.08999 * 109.48291 * 65.35581 * 9 8 7 24 24 H 1.08007 * 125.89039 * 0.22697 * 13 12 10 25 25 H 1.07997 * 126.29146 * 179.97438 * 14 13 12 26 26 H 1.08002 * 126.28844 * 180.02562 * 15 14 13 27 27 H 1.07995 * 125.89802 * 180.02562 * 16 15 14 28 28 H 1.09003 * 109.47816 * 56.38585 * 17 10 9 29 29 H 1.09003 * 109.48302 * 176.40736 * 17 10 9 30 30 H 1.08996 * 109.62586 * 8.96110 * 18 7 2 31 31 H 1.08993 * 109.62493 * 248.38813 * 18 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7038 1.3495 0.1308 5 1 1.9910 2.3383 -1.2726 6 1 1.7948 2.4515 1.1418 7 6 2.0046 -1.1941 -0.0005 8 6 3.4765 -1.2397 -0.3461 9 6 3.6902 -2.3043 -1.4273 10 6 3.1136 -3.6377 -0.9486 11 1 3.5745 -3.9107 0.0005 12 7 3.3957 -4.6754 -1.9434 13 6 2.9693 -4.6714 -3.2384 14 6 3.4234 -5.7922 -3.8353 15 6 4.1564 -6.5148 -2.8733 16 6 4.1230 -5.8079 -1.7254 17 6 1.6007 -3.5109 -0.7611 18 6 1.3084 -2.4918 0.3451 19 1 -0.4851 0.8400 0.0004 20 1 3.7946 -0.2673 -0.7219 21 1 4.0531 -1.4987 0.5418 22 1 4.7571 -2.4178 -1.6199 23 1 3.1857 -1.9981 -2.3437 24 1 2.3706 -3.9034 -3.7055 25 1 3.2552 -6.0828 -4.8617 26 1 4.6545 -7.4607 -3.0273 27 1 4.5915 -6.0900 -0.7942 28 1 1.1457 -3.1762 -1.6934 29 1 1.1866 -4.4798 -0.4819 30 1 0.2336 -2.3238 0.4134 31 1 1.6844 -2.8667 1.2969 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067960.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:20 Heat of formation + Delta-G solvation = 31.498444 kcal Electronic energy + Delta-G solvation = -13323.631301 eV Core-core repulsion = 11184.044597 eV Total energy + Delta-G solvation = -2139.586704 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.71038 -36.72405 -32.83744 -30.57037 -29.74234 -28.32617 -26.89049 -22.51685 -21.66067 -20.42721 -19.70272 -18.70927 -16.85319 -16.12705 -14.51385 -14.00436 -13.65159 -13.42069 -13.06766 -12.84161 -12.33634 -12.05385 -11.90209 -11.63653 -11.52126 -11.11306 -10.93805 -10.73345 -10.26202 -10.04844 -9.66924 -9.10036 -8.95423 -8.48019 -8.00422 -7.69335 -6.24018 -4.10825 2.83259 3.18972 3.30296 3.32125 3.47853 3.58762 4.29781 5.01758 5.31978 5.50252 5.68950 5.70854 5.88271 5.96459 6.02301 6.33624 6.43875 6.58946 6.62055 6.68390 6.76254 6.85038 6.89565 6.99699 7.25766 7.46854 7.52283 7.57303 7.67562 7.81883 7.97921 8.25644 8.84205 9.43013 10.85553 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.058660 B = 0.008901 C = 0.008533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.210651 B = 3144.878780 C = 3280.492450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.082 3.918 3 Si 0.880 3.120 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.500 4.500 8 C -0.012 4.012 9 C -0.112 4.112 10 C 0.140 3.860 11 H 0.085 0.915 12 N -0.432 5.432 13 C -0.003 4.003 14 C -0.220 4.220 15 C -0.215 4.215 16 C -0.023 4.023 17 C -0.112 4.112 18 C 0.013 3.987 19 H 0.265 0.735 20 H 0.038 0.962 21 H 0.016 0.984 22 H 0.039 0.961 23 H 0.059 0.941 24 H 0.154 0.846 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.152 0.848 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.691 -6.147 -2.892 8.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.122 4.122 3 Si 0.708 3.292 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.519 4.519 8 C -0.050 4.050 9 C -0.150 4.150 10 C 0.040 3.960 11 H 0.103 0.897 12 N -0.105 5.105 13 C -0.135 4.135 14 C -0.245 4.245 15 C -0.240 4.240 16 C -0.154 4.154 17 C -0.151 4.151 18 C -0.025 4.025 19 H 0.075 0.925 20 H 0.057 0.943 21 H 0.035 0.965 22 H 0.057 0.943 23 H 0.078 0.922 24 H 0.172 0.828 25 H 0.144 0.856 26 H 0.144 0.856 27 H 0.170 0.830 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 5.444 -5.751 -2.618 8.340 hybrid contribution 0.382 0.851 -0.075 0.936 sum 5.826 -4.900 -2.693 8.075 Atomic orbital electron populations 1.69899 1.06342 1.27158 1.48169 1.24825 0.94559 0.98709 0.94123 0.86757 0.80983 0.83620 0.77881 1.18574 1.20829 1.21021 1.19959 0.92346 0.92370 1.47223 1.19727 0.97220 0.94441 0.93590 1.21921 0.97586 0.94522 1.00979 1.21608 0.98687 0.86353 0.89362 0.89730 1.44821 1.38479 1.17260 1.09919 1.21747 1.05556 1.01222 0.85001 1.20757 1.06915 0.97252 0.99534 1.20733 1.07860 1.01586 0.93794 1.21775 1.03626 0.89807 1.00217 1.21983 0.91637 0.98971 1.02471 1.19376 0.99634 0.91962 0.91560 0.92459 0.94350 0.96543 0.94273 0.92228 0.82813 0.85577 0.85639 0.83014 0.92321 0.94576 0.92009 0.97669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.56 12.81 55.43 0.71 -23.85 16 2 C 0.08 2.17 5.43 -17.82 -0.10 2.07 16 3 Si 0.88 20.27 27.63 -169.99 -4.70 15.57 16 4 H -0.26 -5.79 6.14 56.52 0.35 -5.45 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.50 -12.68 5.44 -98.92 -0.54 -13.22 16 8 C -0.01 -0.26 5.47 -27.49 -0.15 -0.41 16 9 C -0.11 -2.24 5.23 -26.64 -0.14 -2.38 16 10 C 0.14 2.70 2.71 -67.97 -0.18 2.52 16 11 H 0.08 1.58 8.06 -51.93 -0.42 1.16 16 12 N -0.43 -7.80 2.61 -110.07 -0.29 -8.09 16 13 C 0.00 -0.05 10.50 -16.75 -0.18 -0.23 16 14 C -0.22 -3.60 10.86 -39.78 -0.43 -4.03 16 15 C -0.21 -3.41 10.86 -39.78 -0.43 -3.85 16 16 C -0.02 -0.37 11.39 -16.75 -0.19 -0.56 16 17 C -0.11 -2.36 5.21 -26.63 -0.14 -2.50 16 18 C 0.01 0.30 5.99 -27.49 -0.16 0.14 16 19 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 20 H 0.04 0.86 5.02 -51.93 -0.26 0.60 16 21 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 23 H 0.06 1.23 8.03 -51.93 -0.42 0.82 16 24 H 0.15 2.56 8.06 -52.48 -0.42 2.13 16 25 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 26 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 28 H 0.06 1.30 8.02 -51.93 -0.42 0.88 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.63 7.11 -51.93 -0.37 1.26 16 31 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 LS Contribution 251.83 15.07 3.80 3.80 Total: -1.00 -27.10 251.83 -7.58 -34.67 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.45 Total: 0.36 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -2.64 Total: -22.46 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.42 Total: -31.94 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.70 Total: 15.57 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.10 -7.58 -34.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067960.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.171 kcal (2) G-P(sol) polarization free energy of solvation -27.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds