Wall clock time and date at job start Mon Mar 30 2020 02:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35084 * 125.85579 * 274.68472 * 10 9 7 12 12 C 1.40244 * 107.25853 * 179.83440 * 11 10 9 13 13 C 1.35262 * 107.61579 * 0.48096 * 12 11 10 14 14 N 1.35824 * 108.18787 * 359.66106 * 13 12 11 15 15 H 0.96993 * 125.67412 * 180.09458 * 14 13 12 16 16 C 1.50900 * 124.00350 * 179.57793 * 13 12 11 17 17 C 1.53339 * 108.41012 * 343.39506 * 16 13 12 18 18 C 1.53121 * 109.52387 * 49.98264 * 17 16 13 19 19 C 1.50753 * 128.03720 * 180.25231 * 12 11 10 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07999 * 126.36761 * 359.97325 * 11 10 9 24 24 H 1.08996 * 109.67460 * 103.12217 * 16 13 12 25 25 H 1.09003 * 109.67512 * 223.66171 * 16 13 12 26 26 H 1.09003 * 109.46587 * 289.96371 * 17 16 13 27 27 H 1.09002 * 109.45512 * 169.99034 * 17 16 13 28 28 H 1.09002 * 109.47617 * 169.87446 * 18 17 16 29 29 H 1.08995 * 109.47010 * 49.86505 * 18 17 16 30 30 H 1.08993 * 109.68512 * 283.54308 * 19 12 11 31 31 H 1.09004 * 109.67929 * 44.08940 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.8124 -4.1831 -1.1039 12 6 3.6513 -5.2166 -0.6624 13 6 3.5457 -5.2824 0.6845 14 7 2.6766 -4.3202 1.0891 15 1 2.4165 -4.1424 2.0064 16 6 4.2889 -6.2773 1.5417 17 6 4.8066 -7.4032 0.6386 18 6 5.5402 -6.7996 -0.5623 19 6 4.5262 -6.1215 -1.4921 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.6618 -3.8736 -2.1276 24 1 5.1286 -5.7845 2.0317 25 1 3.6155 -6.6897 2.2931 26 1 3.9665 -8.0024 0.2873 27 1 5.4925 -8.0350 1.2030 28 1 6.0597 -7.5891 -1.1053 29 1 6.2630 -6.0622 -0.2133 30 1 3.9126 -6.8784 -1.9806 31 1 5.0531 -5.5341 -2.2441 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535712579.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:39 Heat of formation + Delta-G solvation = 10.849373 kcal Electronic energy + Delta-G solvation = -12886.753677 eV Core-core repulsion = 10746.271562 eV Total energy + Delta-G solvation = -2140.482115 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.66427 -36.11923 -33.13699 -31.49911 -29.84752 -28.58014 -26.37503 -23.55625 -21.97802 -21.10958 -19.24616 -17.84558 -16.44630 -16.11285 -14.72057 -14.48683 -13.61404 -13.45693 -13.23482 -12.79312 -12.54064 -12.24229 -11.78612 -11.70007 -11.37622 -11.14824 -10.76558 -10.68446 -10.64097 -10.29969 -10.10584 -9.67233 -9.37279 -8.44650 -7.82893 -6.86111 -6.03675 -4.08949 3.07050 3.29000 3.36657 3.42406 3.84048 4.07834 4.45512 5.04285 5.07642 5.14425 5.29475 5.61270 5.65445 5.79868 5.82605 5.99366 6.01707 6.16124 6.24258 6.31242 6.45813 6.54967 6.61903 7.05540 7.13827 7.44238 7.52378 7.90905 7.97073 8.17040 8.27283 8.52360 8.96531 9.55383 11.04332 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.057256 B = 0.007185 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.917521 B = 3895.830302 C = 3960.610268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.059 0.941 9 C 0.076 3.924 10 C 0.078 3.922 11 C -0.218 4.218 12 C -0.165 4.165 13 C -0.026 4.026 14 N -0.552 5.552 15 H 0.406 0.594 16 C -0.041 4.041 17 C -0.109 4.109 18 C -0.117 4.117 19 C -0.043 4.043 20 H 0.262 0.738 21 H 0.022 0.978 22 H 0.042 0.958 23 H 0.125 0.875 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.852 -11.937 1.451 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.077 0.923 9 C 0.038 3.962 10 C -0.035 4.035 11 C -0.241 4.241 12 C -0.172 4.172 13 C -0.137 4.137 14 N -0.146 5.146 15 H 0.241 0.759 16 C -0.079 4.079 17 C -0.147 4.147 18 C -0.154 4.154 19 C -0.080 4.080 20 H 0.071 0.929 21 H 0.040 0.960 22 H 0.060 0.940 23 H 0.143 0.857 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.669 -11.801 1.586 14.163 hybrid contribution 0.238 1.182 0.424 1.278 sum 7.907 -10.619 2.010 13.392 Atomic orbital electron populations 1.69967 1.06032 1.26753 1.50738 1.25019 0.94887 0.99309 0.95203 0.86464 0.80155 0.83404 0.77616 1.19682 1.20838 1.21020 1.21154 0.93237 0.89883 1.50665 0.92320 1.17923 0.91616 0.88174 0.98456 1.21449 1.00733 0.96459 0.84878 1.20246 1.04660 1.01308 0.97874 1.19123 1.04075 1.01574 0.92463 1.19857 1.01701 0.97747 0.94404 1.41728 1.36363 1.27683 1.08827 0.75897 1.20023 0.97930 0.93740 0.96175 1.21470 0.99849 0.96861 0.96490 1.21570 0.97976 0.99459 0.96410 1.19945 0.95282 0.96500 0.96307 0.92878 0.95959 0.94002 0.85687 0.91648 0.91961 0.91797 0.92058 0.92358 0.92036 0.92188 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.56 9.09 -34.44 -0.31 -14.87 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 9 C 0.08 2.00 5.51 -29.03 -0.16 1.84 16 10 C 0.08 1.80 6.36 -81.61 -0.52 1.28 16 11 C -0.22 -4.78 10.75 -39.95 -0.43 -5.21 16 12 C -0.16 -3.14 5.94 -104.90 -0.62 -3.76 16 13 C -0.03 -0.46 7.05 -81.79 -0.58 -1.04 16 14 N -0.55 -10.89 6.07 -5.30 -0.03 -10.92 16 15 H 0.41 7.04 8.96 -40.82 -0.37 6.67 16 16 C -0.04 -0.55 6.30 -27.61 -0.17 -0.73 16 17 C -0.11 -1.28 5.90 -26.49 -0.16 -1.44 16 18 C -0.12 -1.44 5.91 -26.47 -0.16 -1.60 16 19 C -0.04 -0.64 6.29 -27.66 -0.17 -0.81 16 20 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 21 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.04 1.16 8.14 -51.93 -0.42 0.73 16 23 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 259.20 15.07 3.91 3.91 Total: -1.00 -30.67 259.20 -8.34 -39.02 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.55 Total: 1.89 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -3.38 Total: -24.81 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.70 Total: -36.75 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.67 -8.34 -39.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535712579.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.867 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds