Wall clock time and date at job start Mon Mar 30 2020 02:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35084 * 125.85579 * 274.68472 * 10 9 7 12 12 C 1.40244 * 107.25853 * 179.83440 * 11 10 9 13 13 C 1.35262 * 107.61579 * 0.48096 * 12 11 10 14 14 N 1.35824 * 108.18787 * 359.66106 * 13 12 11 15 15 H 0.96993 * 125.67412 * 180.09458 * 14 13 12 16 16 C 1.50900 * 124.00350 * 179.57793 * 13 12 11 17 17 C 1.53339 * 108.41012 * 343.39506 * 16 13 12 18 18 C 1.53121 * 109.52387 * 49.98264 * 17 16 13 19 19 C 1.50753 * 128.03720 * 180.25231 * 12 11 10 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07999 * 126.36761 * 359.97325 * 11 10 9 24 24 H 1.08996 * 109.67460 * 103.12217 * 16 13 12 25 25 H 1.09003 * 109.67512 * 223.66171 * 16 13 12 26 26 H 1.09003 * 109.46587 * 289.96371 * 17 16 13 27 27 H 1.09002 * 109.45512 * 169.99034 * 17 16 13 28 28 H 1.09002 * 109.47617 * 169.87446 * 18 17 16 29 29 H 1.08995 * 109.47010 * 49.86505 * 18 17 16 30 30 H 1.08993 * 109.68512 * 283.54308 * 19 12 11 31 31 H 1.09004 * 109.67929 * 44.08940 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.8124 -4.1831 -1.1039 12 6 3.6513 -5.2166 -0.6624 13 6 3.5457 -5.2824 0.6845 14 7 2.6766 -4.3202 1.0891 15 1 2.4165 -4.1424 2.0064 16 6 4.2889 -6.2773 1.5417 17 6 4.8066 -7.4032 0.6386 18 6 5.5402 -6.7996 -0.5623 19 6 4.5262 -6.1215 -1.4921 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.6618 -3.8736 -2.1276 24 1 5.1286 -5.7845 2.0317 25 1 3.6155 -6.6897 2.2931 26 1 3.9665 -8.0024 0.2873 27 1 5.4925 -8.0350 1.2030 28 1 6.0597 -7.5891 -1.1053 29 1 6.2630 -6.0622 -0.2133 30 1 3.9126 -6.8784 -1.9806 31 1 5.0531 -5.5341 -2.2441 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535712579.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:39 Heat of formation + Delta-G solvation = -6.924102 kcal Electronic energy + Delta-G solvation = -12887.524393 eV Core-core repulsion = 10746.271562 eV Total energy + Delta-G solvation = -2141.252831 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.19534 -37.31188 -35.26420 -32.89727 -31.71593 -29.90236 -28.04653 -25.37563 -23.42738 -22.27740 -20.94679 -19.19149 -18.57751 -17.70953 -16.48808 -15.90974 -14.89395 -14.75328 -14.59064 -14.44361 -14.07480 -13.91372 -13.41848 -13.23969 -13.09837 -12.67847 -12.52724 -12.48402 -11.77520 -11.62409 -11.50377 -11.39930 -11.21679 -10.65273 -9.42179 -8.54419 -8.15408 -6.37943 1.36387 1.37578 1.49405 1.55431 2.16512 2.40328 2.57793 3.06630 3.97068 4.11066 4.13053 4.40317 4.43812 4.70793 4.74642 4.78577 4.81180 4.93779 5.07442 5.13809 5.19244 5.20900 5.26991 5.35863 5.56156 5.59774 5.69498 5.80461 6.09393 6.37716 6.48554 6.72905 6.96333 7.31728 8.84992 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.057256 B = 0.007185 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.917521 B = 3895.830302 C = 3960.610268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.050 0.950 9 C 0.088 3.912 10 C 0.039 3.961 11 C -0.231 4.231 12 C -0.185 4.185 13 C -0.010 4.010 14 N -0.550 5.550 15 H 0.414 0.586 16 C -0.042 4.042 17 C -0.106 4.106 18 C -0.113 4.113 19 C -0.044 4.044 20 H 0.267 0.733 21 H 0.005 0.995 22 H 0.014 0.986 23 H 0.116 0.884 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.943 -13.079 2.210 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.068 0.932 9 C 0.050 3.950 10 C -0.074 4.074 11 C -0.255 4.255 12 C -0.192 4.192 13 C -0.122 4.122 14 N -0.145 5.145 15 H 0.251 0.749 16 C -0.080 4.080 17 C -0.144 4.144 18 C -0.151 4.151 19 C -0.082 4.082 20 H 0.076 0.924 21 H 0.023 0.977 22 H 0.032 0.968 23 H 0.134 0.866 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.758 -12.954 2.354 16.387 hybrid contribution -0.428 1.476 0.182 1.547 sum 9.330 -11.478 2.537 15.007 Atomic orbital electron populations 1.70076 1.07592 1.28055 1.51153 1.25919 0.95799 1.03082 0.94418 0.85356 0.78696 0.78592 0.78150 1.19319 1.19958 1.19844 1.21390 0.92949 0.91302 1.51184 0.93188 1.17575 0.91797 0.89406 0.96194 1.20926 1.02367 0.97402 0.86719 1.20445 1.05328 1.02416 0.97313 1.19583 1.04434 1.01595 0.93584 1.20735 0.99696 0.96733 0.95023 1.41721 1.36504 1.27698 1.08565 0.74871 1.20274 0.98156 0.93229 0.96340 1.21512 1.00440 0.96296 0.96134 1.21577 0.97139 0.99969 0.96385 1.20055 0.95493 0.96126 0.96487 0.92396 0.97677 0.96819 0.86606 0.90263 0.90070 0.91861 0.88764 0.89535 0.92452 0.91272 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.53 -31.23 9.09 25.60 0.23 -31.00 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.09 4.89 5.51 29.10 0.16 5.05 16 10 C 0.04 1.88 6.36 41.10 0.26 2.14 16 11 C -0.23 -10.46 10.75 22.03 0.24 -10.22 16 12 C -0.19 -6.92 5.94 -20.05 -0.12 -7.04 16 13 C -0.01 -0.34 7.05 41.32 0.29 -0.04 16 14 N -0.55 -21.74 6.07 -170.69 -1.04 -22.78 16 15 H 0.41 14.38 8.96 -92.71 -0.83 13.55 16 16 C -0.04 -0.99 6.30 30.03 0.19 -0.80 16 17 C -0.11 -2.03 5.90 30.75 0.18 -1.85 16 18 C -0.11 -2.38 5.91 30.76 0.18 -2.20 16 19 C -0.04 -1.23 6.29 29.99 0.19 -1.04 16 20 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 21 H 0.00 0.28 8.14 -2.38 -0.02 0.26 16 22 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.12 5.26 8.06 -2.91 -0.02 5.23 16 24 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.25 8.11 -2.39 -0.02 1.23 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.27 8.11 -2.39 -0.02 1.25 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -67.45 259.20 3.82 -63.62 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.28 Total: 14.37 kcal Atomic # 6 Polarization: -48.46 SS G_CDS: 2.27 Total: -46.19 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -0.75 Total: -78.83 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -67.45 3.82 -63.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535712579.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.700 kcal (2) G-P(sol) polarization free energy of solvation -67.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds